Xxan014672.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754471.1:32693517-32702819[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.04 31 5.3 0.1 22 43 349 370 337 375 0.89 2 10 0.082 63 4.3 0.1 20 46 375 401 370 407 0.82 3 10 0.014 10 6.8 0.2 21 43 404 426 399 433 0.88 4 10 0.066 51 4.6 0.1 22 43 433 454 427 458 0.86 5 10 0.0054 4.1 8.1 0.1 20 44 459 483 454 491 0.84 6 10 0.047 36 5.1 0.1 22 43 489 510 482 519 0.84 7 10 1.1 8.8e+02 0.7 0.1 21 43 516 538 511 543 0.77 8 10 0.13 99 3.7 0.1 21 43 544 566 538 571 0.88 9 10 0.0075 5.7 7.7 0.1 20 43 571 594 566 599 0.87 10 10 0.1 79 4.0 0.1 21 43 600 622 595 631 0.84
Sequence Information
- Coding Sequence
- atgtgtcgattgtgcttatcaaGTGGCGTTACATTGTTagatatatttcatttttcatcgAAAATGAACAACAGGTTGGCTGGTGTTATAATGAAATGTGCTGCCGTTCAGATAACCAGGATCGATGAGAAGCCGAATTTCATCTGCCAATCATGTCACACTAAACTGGAAGAAACTCATCAGTTCCTGACACAAATAGAACGGTCTGACAGAACACTGCAACGTTATCTTCAGTTATTATGCGTTTCTGGTAACTCAATTAAAGCTGAAAATTCTATTCAACCTTCTGAGGATAATTTAATCCTCAACACTAATAACGATATTGTGAAAAATGAATCTTTAGAGCTCAACGACGTGTTTGACACGAAACCTGAAAATGTCAtccaagaaaacaaaaataacgtggaaatatgtttaaaatctgaaatcaaagtcGAACTGGTtgatgataatttatttttaccagACATTTTGTCTAATATAGATGACAACGAATTCATATGTGAAGACTCAAAGATCGACATAGGTGAGACCAAAGTGGGTGAAGATATGACAGTTAACTGGAAAGAGCCAGAATTGGAAAATTATAATGTAACGGACAAATTAATGGACGAAATATCTTTAAATGTCAATATCAATGACGAAAAGGTGGACgcaagtttattaatttttacagaaTCAGTCGATCACTCGGAAAACGCTTCATCTGTCCGCGATTTGACTCAAATTAGCCGCGAAGATACAAAGATTAATATTGGCGACACATCGCAGAATTCGTGTTTACGTGCTGCAAATGTGATCGAAAATTATCGTAAATGTGATGAGAGAAATAAAAACCTTCCGATAAATCGTaagaaacacaaaaaaacaaataatttgaaatcGTATCAATGCGACATTTGCAATAAGTGTTACTCCACTAAGTCTGGTTTCTATTTTCATAAACGAaaacatactggtgaaaaaccatatAAAAGCAACGTTTGTATTAAATCCTTTATTACATCCGAAAAATTGAAGATCCACCAACGGATACATACCGGAGataaaccttatcagtgtgacatttgtaagaagtgtttcgcTCAGTCATCCAATTTAACGTTTCACAAGTGtaaacataccggtgagaaaccttatcagtgtgacatttgtaagaagagCTTCTCTCAGTCATTCAGTTTAACGgcacacaaacgtatacataccggtgagaaaccttatcagtgtgacatttgtaagaagagtTTCTGTCAGTCATCCAATTTAACGGCACACAAGCGTAAACATACCGGtaagaaaccttatcagtgtgaaaTTTGTAAGAAGAGTTTCTCTCAGTCATCCAATTTAACGTTTCACAAGCGtaaacataccggtgagaaaccttatcagtgtgacatttgtaagaagagtTTCTCTCAGTCATCCAATTTAACGGCACACAAGCGCAAACATACCGGtaagaaaccttatcagtgtgaaaTTTGTAAGAAGAGTTTCTCTCAGTCATCCAATTTAACGTTTCACAAGCGtaaacataccggtgagaaaccttatcagtgtgacatttgtaagaagagCTTCTCTAAGTCATTCAGTTTAACTttacacaaacgtatacataccggtgagaaaccttatcagtgtgacatttgtaagaagagtTTCTCTCAGTCATCCACTTTAACGTCACACAAGCGTAAacataccggcgagaaaccttatcagtgtgacatttgtaagaagagtTTCTCTCAGTCATCCAATTTAACGTCACACAAGCGtaaacataccggtgagaaaccttatcagtgtgacatttgtaagaagagtTTCTCTCATTCATCCAATTTAACGTTACACAAGCGtaaacataccggtgagaaaccttattaG
- Protein Sequence
- MCRLCLSSGVTLLDIFHFSSKMNNRLAGVIMKCAAVQITRIDEKPNFICQSCHTKLEETHQFLTQIERSDRTLQRYLQLLCVSGNSIKAENSIQPSEDNLILNTNNDIVKNESLELNDVFDTKPENVIQENKNNVEICLKSEIKVELVDDNLFLPDILSNIDDNEFICEDSKIDIGETKVGEDMTVNWKEPELENYNVTDKLMDEISLNVNINDEKVDASLLIFTESVDHSENASSVRDLTQISREDTKINIGDTSQNSCLRAANVIENYRKCDERNKNLPINRKKHKKTNNLKSYQCDICNKCYSTKSGFYFHKRKHTGEKPYKSNVCIKSFITSEKLKIHQRIHTGDKPYQCDICKKCFAQSSNLTFHKCKHTGEKPYQCDICKKSFSQSFSLTAHKRIHTGEKPYQCDICKKSFCQSSNLTAHKRKHTGKKPYQCEICKKSFSQSSNLTFHKRKHTGEKPYQCDICKKSFSQSSNLTAHKRKHTGKKPYQCEICKKSFSQSSNLTFHKRKHTGEKPYQCDICKKSFSKSFSLTLHKRIHTGEKPYQCDICKKSFSQSSTLTSHKRKHTGEKPYQCDICKKSFSQSSNLTSHKRKHTGEKPYQCDICKKSFSHSSNLTLHKRKHTGEKPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530601;
- 90% Identity
- iTF_01530601;
- 80% Identity
- iTF_01530601;