Xxan022389.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:15942660-15943922[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.65 5e+02 1.5 0.0 16 46 94 124 83 130 0.79 2 9 3.1 2.4e+03 -0.7 0.1 25 44 131 150 122 159 0.80 3 9 1.4 1e+03 0.4 0.1 21 43 155 177 147 182 0.80 4 9 0.0013 1 10.0 0.2 21 43 183 205 176 213 0.86 5 9 0.01 7.9 7.2 0.1 22 48 211 237 208 243 0.85 6 9 0.41 3.1e+02 2.1 0.0 22 43 296 317 291 321 0.87 7 9 0.0011 0.85 10.3 0.1 21 43 323 345 317 349 0.89 8 9 0.23 1.7e+02 2.9 0.2 21 43 351 373 345 380 0.80 9 9 0.16 1.2e+02 3.4 0.0 21 43 386 408 381 415 0.89
Sequence Information
- Coding Sequence
- ATGCCAACAAATCAAGACAGCTCTAACCAAGGAACAGAAATAGCTTTTGTAGACATTCCTATTAAATGTGAAGCTACGGAAGACAGTTGCGCGGACATGGCCAATTTCAGTGATGAAACGGATGCTGATCTTACCGACAACATAATTACTTGGGAAAAAAATAAGAGTGGCCTTGAAGACAGCAAAACGAACGAATTAGAATCAAAATCTCAAATATTATGGAACGTAAACAGCAGCAGCGGAGAAAATAAAACTCAACCAGTGAATAGCAAACAAACAGACAGTACAAAAAAAGAGGAAGAGGATTATTACTGCGATATTTGCGACAAGCATATAACTAAGTTGATGTCTTTTAAAAGACACAAGCGGCTACACAATAGCAAGAGAGTGTAtgaatgtgacgtttgtaataagactTTCAATCAGTTGTGCAACTTAAACAGTCACAAACGTACACACagtggtgagaaaccatataaaTGCGATCTTTGTGACATGAGTTTTTACCACGCCTCTAATTTAAATTgtcacaaacgtacacatactcgagagaaaccgtatcaatgtgacatttgtggCAAGACTTTCACCCAGTCAAATAGTTTAAGAAAACACAAACTTGGACATACTGAGAAACGCTTTCTATGTGACATATGTAGCAAGACTTTCACTCAAGCAGTCAATTtgagaaatcacaaaaaaattatacatggcggtgagaaaccgtatcaatgtgacgtaTGTAAAAAGAGATTTCCTCGTTTAAAGTCTTTAAAATATCATTCGTACCAACACAGTGGTGTCAAACCACATCAGTGTGACTTATGTGGTAAATCTTTTCCCCTGCTGAGTATTTTGGTTAGCCACAAAAAAATTCATAGTGGTGATAGACCGcatcaatgtgacgtttgtttCAAGTCTTTCACTCGATCAAATGATTTAAATACACACAAACGtacgcatactggtgagaagccattcAAGTGCGACATTTGTTACAAGACTTTCACGCGGTCCGACCATCTGCGTTCTCACAAACGCACCCATagtggtgagaaaccatatcaatgtgacatttgtacaAAGTCGTTCGCTCAAATAAATACTTTGAAATGTCACAAACTCGCACACATTGGCGTGAAACGATTAAATACAGGcgagaaaccatacaagtgtgaGTTTTGCAACAAGTTTTTCTTTAGATCGACTGAATTAAAACGACACCAGATGTCAAAAAATCATATTGGCGCGACGTTGCAATAA
- Protein Sequence
- MPTNQDSSNQGTEIAFVDIPIKCEATEDSCADMANFSDETDADLTDNIITWEKNKSGLEDSKTNELESKSQILWNVNSSSGENKTQPVNSKQTDSTKKEEEDYYCDICDKHITKLMSFKRHKRLHNSKRVYECDVCNKTFNQLCNLNSHKRTHSGEKPYKCDLCDMSFYHASNLNCHKRTHTREKPYQCDICGKTFTQSNSLRKHKLGHTEKRFLCDICSKTFTQAVNLRNHKKIIHGGEKPYQCDVCKKRFPRLKSLKYHSYQHSGVKPHQCDLCGKSFPLLSILVSHKKIHSGDRPHQCDVCFKSFTRSNDLNTHKRTHTGEKPFKCDICYKTFTRSDHLRSHKRTHSGEKPYQCDICTKSFAQINTLKCHKLAHIGVKRLNTGEKPYKCEFCNKFFFRSTELKRHQMSKNHIGATLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530873;
- 90% Identity
- iTF_01530873;
- 80% Identity
- iTF_01530873;