Xxan020442.2
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754474.1:5903043-5904955[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.022 17 6.2 0.2 23 44 282 303 272 308 0.80 2 9 0.00093 0.71 10.6 0.0 21 44 308 331 305 339 0.86 3 9 0.00079 0.61 10.8 0.2 21 44 336 359 333 367 0.88 4 9 0.91 7e+02 1.0 0.0 19 41 362 384 359 391 0.72 5 9 0.16 1.2e+02 3.4 0.2 21 43 392 414 389 420 0.88 6 9 0.07 54 4.5 0.0 21 44 420 443 416 451 0.86 7 9 0.016 13 6.6 0.2 21 44 448 471 443 479 0.86 8 9 1.4 1e+03 0.4 0.1 21 43 476 498 473 504 0.81 9 9 0.0025 1.9 9.2 0.5 20 48 503 530 492 535 0.85
Sequence Information
- Coding Sequence
- ATGGAAGTAAAAATGCAACAATTAAAAGTAACTGATAATGGTTTTCACCAAATGTGCAGATTATGCCTATCATGtgatataaataaaactgacatatttttgttttcctccgaatttgagaaaaaaatagctgattttataGTGGAATGTATTCCCGTTCAaATTACTAGACATGATAAGATGCCGACCTATATTTGTCAATCATGTTTCACTCAATTAAAAACGTTTCACCAATTCCAAATGCAAGCAGTACAATCTGATAGAACACTGCAGCATTATCTACAGCAGTTGAGCAACTGCCCTGCCCAGATCAAGATAGAATTGGATCACGAAGAGCCATCCGTTAATTTCGAAAATCGGACCTCTAATGCCGATGTCAAGGGCGAACCTTTCGAAATTGGTGATGGGTTTGATATTTCTGATTCAAAACAGAACGTACAagaaattgcatttaaaaaGGAAACATCTTTtaaatccgaaatcaaagaGGAACCTACGGATGATGAGTCATTATCTCCAACAGAGTGTGTTGACACACTGCAAACTTTATCTAAGGATGGCAGTAGTGAAGATTCAGTGACAGCTTTTGACGATGCTAAAATAGGTGTAGAAACGCCGGGAAACTTTGAGTGCGTGACGGAGAAGATATTTGTGAAATCGGAAGAAACATACGAGTACGTACCATTTAAAGAAGGCCCCGAAAATTTTAAAGACGTCGAATCTGTTCGTTTTAATGAAGATAATTCGAACAGTTCTGAACATCGCAGTACAAGTCAAAAGTTGAACGAAAAGTCTCGTGACTTTCGAAAGATACTAAAAAAATCAGCAACTTCTACTGAAAGCAAAtcttaccagtgtgacatttgtcaaatgcgTTTCAGTAAAtcgagcaatttaaaaagacATACATTAATACATACAGGGGAGAAGCCTTACCAGTGTGAGATTTGTAAAATGCTTTTCAGAGGGGCGCGTAATTTaaagattcataatttaatacacacaggagagaaaccttaccagtgtgacatttgtcaaatgtgtttcagtaagtcgagcaatttaaaaagacATAAATCAACACATACAGGGGAGAAGCcgcaccagtgtgacatttgtaaaatgtatttcggaACGATgtacactttaaaaaaacataatttaatacacactggagagaaaccgtaccagtgtgacgtttgtcaaatgtgttttaGACATacaacttctttaaaaaatcataaattagaacatacaggagagaaaccataccagtgtgagaTTTGTAAAATGGGTTTTACTAACTCGAGTATATTAAAGAGACACCATTTAATACATTCAGAAGAGAAACCGTACcggtgtgatatttgtaaaatgtgttttatcGAGTCGAATAAATTAAAGAGACATAATCTtatacatactggagagaaaccgtaccagtgtgaggtttgtaaaatgtgtttcaggCTGCCGGTTtctttaaaaagtcataaattaaagCACACAGGAGAAAAACCGTACcgatgtgacatttgtaatgtGTGTTTCAGACAAGCTGCTCaattaaaaagtcataaattaaaacacgcaggagagaaaccatactag
- Protein Sequence
- MEVKMQQLKVTDNGFHQMCRLCLSCDINKTDIFLFSSEFEKKIADFIVECIPVQITRHDKMPTYICQSCFTQLKTFHQFQMQAVQSDRTLQHYLQQLSNCPAQIKIELDHEEPSVNFENRTSNADVKGEPFEIGDGFDISDSKQNVQEIAFKKETSFKSEIKEEPTDDESLSPTECVDTLQTLSKDGSSEDSVTAFDDAKIGVETPGNFECVTEKIFVKSEETYEYVPFKEGPENFKDVESVRFNEDNSNSSEHRSTSQKLNEKSRDFRKILKKSATSTESKSYQCDICQMRFSKSSNLKRHTLIHTGEKPYQCEICKMLFRGARNLKIHNLIHTGEKPYQCDICQMCFSKSSNLKRHKSTHTGEKPHQCDICKMYFGTMYTLKKHNLIHTGEKPYQCDVCQMCFRHTTSLKNHKLEHTGEKPYQCEICKMGFTNSSILKRHHLIHSEEKPYRCDICKMCFIESNKLKRHNLIHTGEKPYQCEVCKMCFRLPVSLKSHKLKHTGEKPYRCDICNVCFRQAAQLKSHKLKHAGEKPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531196;
- 90% Identity
- iTF_01531196;
- 80% Identity
- iTF_01531196;