Xxan022570.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:16966328-16972530[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00043 0.33 11.6 0.2 7 46 211 250 196 257 0.87 2 8 0.25 1.9e+02 2.8 0.1 19 43 449 473 444 477 0.84 3 8 0.00093 0.71 10.6 0.2 18 45 476 503 468 511 0.80 4 8 1.3 9.6e+02 0.5 0.0 21 43 507 529 503 535 0.87 5 8 0.0054 4.2 8.1 0.1 21 43 535 557 530 563 0.90 6 8 0.053 41 4.9 0.1 21 43 563 585 561 595 0.86 7 8 8.4 6.4e+03 -2.1 0.0 22 36 592 606 589 615 0.76 8 8 0.0033 2.5 8.8 0.1 21 44 619 642 607 650 0.84
Sequence Information
- Coding Sequence
- ATGGAGTGTACTCATGTTAAGCTGACGGAACCCGATGAGATGCCGACCCGCATCTGCCAAATGTGTTGTAATAGACTAGAGGACATTCACGAGTTCCAAAATCAAGTagtacagtctgaaaaaacaTTGCGCCAGTATTTACAGCAATTACACTGTGCTGAGAAACGAACCAATCATTTAATGCATGGTTCTGCCGAGTATTTAAAAGATCAGACCTCTGGTACAgaaattactataaaatatgAACCCGTAGAAAAAAAAGACATAGACGTAAGTTACTGGAATGAGAAACAATCTAGGTCGCCAAATGCAACAAACCATATAAAGGAAGAAACATCTACAGAGTTGGAATTTTGTCACGTTGAAATTAAAGAAGAACCGAACaatgataaattaattactgatgatttatatagaaaatgtTCTGATGAAATAACAAATACGCCACGTAACgaagataaaataaaagtcgAGAATATTGTATACGATGAAATGATTCCTGACGCTAAATGTTCCGATTTTGATGGAAGCTTAAACAAAATTGGAAATCCTTGTGCATATGACGTGGTCAACAAAATGCCTTCCGTAAATGAAAAATCTTACCAAtgtaacatttgtaaaaagAGTTTCAGAGTTCCTTCTGGTTTAAACAAACATAAATTAAGTCATACAgatgagaaaccataccagtgtgaagTTTGTAAAACGTGCTTCAAACAGTCAAGTGATTTAAAGATGCATACATTGATTCATACAGGAGTGAAACCGtaccaatgtgacCTGACGGAACCCGATGAGATGCCGACCCGCATCTGTCTAATATGTTGTAATAAACTAGAGGACATTCACGAGTTCCAAAATCAAGTagtacagtctgaaaaaacaTTGCGCCACTATTTACAGCAATTACACTGTGCTGAGAAACGAACCAATCATTTAATGCATGGTTCTGCCGAGTATTTAAAAGATCAGACCTCTGGTACAGAAATTACTATTAAATGTGAACCCGTAGAAATGAATGACATGGACGTAAGTTACTGGAATGAGAAACAATCTAGGTCTCCAAATACAACAAACCATATAAAGGAAGAAACATCTACAGATTTGGAATTTTGTCACGTTGAAATTAAAGAAGAACCGAACAATGATGATGAATTGATTACTgatgatttatatagaaaatgtTCTGATGACATAACAAATACACCACGTAACgaagataaaataaaagtcgAGAATATTGGTTACGATGAAATGATTCCTGAGGCCAAATGTTCCGATTTTGATGGAAGCATAAACAGAATTGGAAATCCTTGTACATATAGCGTGGTTAACAAAATGCCTTCCGCAAATGAGAAACCTTACCAAtgtaacatttgtaaaaagAGTTTCAGAGTTGTTTCTGGCTTAAACAAACATAAATTAACTCATACAgaagagaaaccataccagtgtgaagTTTGTAGAACGTGCTTCAGACAGTCAAGTGATTTAAAGATGCATACATTGattcatacaggagagaaaccgtaccaatgtgatgtttgtaaaaagtcttttacacaaaatattagtttaaaaaatcataaactaACTCACACTGGAGAGAAGCCATTCTcttgtgacgtttgtaaacgATCTTTTAGACAATTGCAACATTTAAGGAAACACAAATTAATTCATACAGGGGAGAAACCtcaccagtgtgacatttgcaaAATGTGTTTCAGAATATCAGATCACTTGAAGGGTCACAAACTAACCCATACAGGTgaaaaaccataccagtgtgaagTTTGTGAAATGTCTTTTAGAGATTTGGGTACCTTTAAACATCACAAATTTactcatacaggagagaaaccgtaccgatgtgatatttgtgaaaaaacttTCAGGCAGTTATACAGTTTAAAGAGACATAAGCTAATACACACAGGGGAGAAACCGTAG
- Protein Sequence
- MECTHVKLTEPDEMPTRICQMCCNRLEDIHEFQNQVVQSEKTLRQYLQQLHCAEKRTNHLMHGSAEYLKDQTSGTEITIKYEPVEKKDIDVSYWNEKQSRSPNATNHIKEETSTELEFCHVEIKEEPNNDKLITDDLYRKCSDEITNTPRNEDKIKVENIVYDEMIPDAKCSDFDGSLNKIGNPCAYDVVNKMPSVNEKSYQCNICKKSFRVPSGLNKHKLSHTDEKPYQCEVCKTCFKQSSDLKMHTLIHTGVKPYQCDLTEPDEMPTRICLICCNKLEDIHEFQNQVVQSEKTLRHYLQQLHCAEKRTNHLMHGSAEYLKDQTSGTEITIKCEPVEMNDMDVSYWNEKQSRSPNTTNHIKEETSTDLEFCHVEIKEEPNNDDELITDDLYRKCSDDITNTPRNEDKIKVENIGYDEMIPEAKCSDFDGSINRIGNPCTYSVVNKMPSANEKPYQCNICKKSFRVVSGLNKHKLTHTEEKPYQCEVCRTCFRQSSDLKMHTLIHTGEKPYQCDVCKKSFTQNISLKNHKLTHTGEKPFSCDVCKRSFRQLQHLRKHKLIHTGEKPHQCDICKMCFRISDHLKGHKLTHTGEKPYQCEVCEMSFRDLGTFKHHKFTHTGEKPYRCDICEKTFRQLYSLKRHKLIHTGEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530965;
- 90% Identity
- iTF_01530965;
- 80% Identity
- iTF_01530965;