Xxan022871.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:19860478-19862550[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.2 9.4e+02 0.6 0.1 24 46 194 216 180 222 0.79 2 10 0.14 1.1e+02 3.6 0.6 20 47 218 245 202 252 0.83 3 10 6.6e-06 0.0051 17.4 0.2 20 52 274 306 267 306 0.84 4 10 0.00011 0.082 13.6 0.5 20 44 302 326 299 331 0.91 5 10 0.34 2.6e+02 2.4 0.1 22 51 332 361 327 362 0.83 6 10 0.12 94 3.8 0.1 21 48 359 385 357 391 0.85 7 10 0.1 76 4.1 0.1 21 43 415 437 406 443 0.86 8 10 0.0029 2.2 9.0 0.1 21 47 443 469 440 475 0.86 9 10 0.033 25 5.6 0.1 21 47 471 497 466 504 0.85 10 10 0.54 4.1e+02 1.7 0.0 21 43 499 521 495 525 0.87
Sequence Information
- Coding Sequence
- ATGGATCCTTTAGCCGATGTAATTATGAAGTGTGCTCCGGTTCAGATAACGAGATACGACGAGATGCCGAGTTTCATCTGCCAATCATGCAACACTCAACTGGAAAAAAGTCACCAGTTCCAGAAGCAAATAGTGCAGTCGGACCAGACACTGCAACGCTATCTTCAGAAACTACGGACTACTAACAAACAAATCAAGGTTGAATGTTCCATTCAGGGACCGTCTGAAGTTTCTGTAATTCATAATACTACTACAGATATCAAGATAAAACGTGAACCTTCAGAATTTCAAGACGTGTCTGATATTAATGTAAACGTGAAAGAAGAGGTGCCTTCAAATTATACTTCATCGTACACTATTAACGaggaaattaatttaaaatctgaaattaaagaagAACCAATAGACGATTATTCATCAATGCCAACGGAGGGTACTGATAACTTAATAGATCCAATATCTGCGGGCGACGACGCAAccgaaaaaaagttaaaaaactcaGAAAACGACGAACGATCGGGTACCTTCACGCGACTTCCACCTGCTCAAGTAACGAAACGTTTAGCTAAAAGTGGGATGTCATATCAATGTGAGAtttgtaataagcgtttcaACAAATCAGATAGTTTTAGAAAACATCaacgcgtacatactggtgagaaaccttatcagtgtgactgttgtgaaaagtgtttcactcagtcatCCACATTAAGTAAACACAAACGtattcatactggtgagaagccatatcaatgtaacgtttgtaataaaagtttcgatagtttattaattttaaataatcacagacgaacacatactggtgagaaaccgtatcagtgtgacgtttgtaataagtgtttcagagAATCACGTAACTTGAAAATGCATCTGCGCGTACATACtagtgagaagccatatcagtgtgacgtttgcaaaaCAAATTTCAGACAATCGTGTAACTTGAAAACACACCAgcgcatacatactggtgagaaagcTTATCAGTGCGacctttgtaaaaagtgtttcactcagtcatCCGCATTAAGTAAACACAAACGtctgcatactggtgagaaaccgtatcagtgcgacgtttgtaacaagtgtTTCATTCAGTCATCCAGTTTAAATACACACAAGCTTAAACATACCGGTCAGAAACCTTACCAGTGTGatctttgtaaaaagtgtttcactctcTCAGACAGTTTAAATACAcataaacgtacacatactggcgagagaccttatcagtgtgacatttgcaaGAAGAGTTTTACTCAGTTATCCAATTTAAATTCTCACAAGcttacacatactggtgagaagccgtatcagtgtgacgtttgtaaaaagtgtttccgCGAATCGGGTGCTTTGAGAAAACACCaacgcgtacatactggtgagaagccgtatCAATGTGGAGTTTGTAATATGTGTTTCGGCGAGTCGAGTACTTTGAAAAGACATCAACGcgtacataccggtgagaaaccgtatcagtgtgacgtttgtaataaacaatTTGCTCAGTCAGGCGATTTAAATATTCACAAGCGTAAACACTCGACAGTTGTTTAA
- Protein Sequence
- MDPLADVIMKCAPVQITRYDEMPSFICQSCNTQLEKSHQFQKQIVQSDQTLQRYLQKLRTTNKQIKVECSIQGPSEVSVIHNTTTDIKIKREPSEFQDVSDINVNVKEEVPSNYTSSYTINEEINLKSEIKEEPIDDYSSMPTEGTDNLIDPISAGDDATEKKLKNSENDERSGTFTRLPPAQVTKRLAKSGMSYQCEICNKRFNKSDSFRKHQRVHTGEKPYQCDCCEKCFTQSSTLSKHKRIHTGEKPYQCNVCNKSFDSLLILNNHRRTHTGEKPYQCDVCNKCFRESRNLKMHLRVHTSEKPYQCDVCKTNFRQSCNLKTHQRIHTGEKAYQCDLCKKCFTQSSALSKHKRLHTGEKPYQCDVCNKCFIQSSSLNTHKLKHTGQKPYQCDLCKKCFTLSDSLNTHKRTHTGERPYQCDICKKSFTQLSNLNSHKLTHTGEKPYQCDVCKKCFRESGALRKHQRVHTGEKPYQCGVCNMCFGESSTLKRHQRVHTGEKPYQCDVCNKQFAQSGDLNIHKRKHSTVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530606;
- 90% Identity
- iTF_01530606;
- 80% Identity
- iTF_01530606;