Xxan022573.2
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:16981484-16983087[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.6 5.1e+03 -1.8 0.0 27 43 225 241 222 247 0.77 2 10 0.036 28 5.5 0.2 21 44 247 270 244 279 0.87 3 10 0.76 5.8e+02 1.2 0.0 22 43 276 297 272 303 0.87 4 10 0.00013 0.097 13.3 0.1 21 44 303 326 292 331 0.89 5 10 0.018 14 6.4 2.2 21 45 331 355 328 363 0.85 6 10 0.91 7e+02 1.0 0.1 21 46 359 384 356 391 0.76 7 10 0.0016 1.2 9.8 0.0 23 43 389 409 384 415 0.89 8 10 0.0031 2.3 8.9 0.3 21 44 415 438 412 446 0.86 9 10 0.19 1.4e+02 3.2 0.1 23 43 445 465 441 470 0.89 10 10 0.0012 0.92 10.2 0.4 21 48 471 497 468 500 0.87
Sequence Information
- Coding Sequence
- atgaagccTTTTAAAAAACTAGGAGAAGACTTAAGTAAACTCTGCAGAATATGTTTAACGCCAAATTTGAAAATGACTGGCATATTTCATTTCCCCCCCAAATTGGGAAGAGAAATAGCTGATTTAATAATGCAATGTGCCCCCGTTCAGATAAAGAGATACGATAATATGCCAACTTCGATCTGTCGATTATGTTACATTCAACTGAAAAAATTTCATAAGTTTCAAATACAAATCGTAAAATCTGACAAATCACTGCGATGCTATCAAAAGCAGCAAAATTTATCTGATCAGCCGATCAAACTAGAAAATTCGGCTGAAGAAGAAATGTCTGACAACCCCGTAAGCCAAACCTTTTCATCTGATGTCATCGTGAAATGTAAATCTTCAGAAGTTAGTTATACATTTGACGAGGCTTACAAATTAGAAAAGGTCTTTATTAAAGAAGAACCAACTGATGATACCTCATTGAATCAAATCGAATATACTGACGATGTAATTAACAGTTATTCTAATATTGATTGCAAGGAAAGCAGTAGAGAAGAAAGAAAGTTCGAAATTGGTGACACTAAAGTTGATCAAAACGTCGGATATCCTTGTCTTACAAACGATATAAAAATTTCTGAATGTTCCGATAAATGcgacattgaaaaaaataaaaaactatatcaATGTCACGCTTGCGAAATGTGTTTTAGAAAATCCAAAATACTAAATGAGCATAcattaatacatacaggagagaaaccgcatcggtgtgacatttgtaacaaGTATTATAGAAAATTAGGTCATTTAAAGAGACATAAGTTAAATCATACTGGAGacaaaccatatcagtgtgacgtttgtaaaatgtgtttcaaagAGTCTGGTACCTTAAAGAATCATGCATTAATTCATgcaggagagaaaccatatcagtgcgatatttgtaaaatatatttcaggCAGTCAAGTACTTTAAAAAGACATTATTTAACTCATACGAAAGAGAGACCTCACAGATGTGAAGTTTGTAATAGTTGTTTCAGGCAACCAGCTGCTTTAAACAgacataaattaatacatacgGGAGAGAAACCTCACCAGtgcaatatttgtgaaatgcgtTTCAGTGAATTCAGTGCTTTAAAGAAACACACGTACATCCATGAAGGAGTGAAACcctatcagtgtgacgtttgtaaaatgtGGTTCAGACAGTCAGATAATTTAAAGAAgcataaattaacacatacaggagagaaaccgcaccaatgtgatatttgtaaaatgtgtttcagacaaCCGGGTACTTTAAATagacataaattaacacataccGGAgtgaaaccataccagtgtgacgtttgtaaattgtttttcagacaattagaTACGCTGAATAGACATAAATTAacgcatacaggagagaaaccgcaccggtgtgacgtttgtgaaatgtgtttcagacagtcaaaacatttaaaaagtcataaattaaaacatacagtaGAGACGCTGTTCTAG
- Protein Sequence
- MKPFKKLGEDLSKLCRICLTPNLKMTGIFHFPPKLGREIADLIMQCAPVQIKRYDNMPTSICRLCYIQLKKFHKFQIQIVKSDKSLRCYQKQQNLSDQPIKLENSAEEEMSDNPVSQTFSSDVIVKCKSSEVSYTFDEAYKLEKVFIKEEPTDDTSLNQIEYTDDVINSYSNIDCKESSREERKFEIGDTKVDQNVGYPCLTNDIKISECSDKCDIEKNKKLYQCHACEMCFRKSKILNEHTLIHTGEKPHRCDICNKYYRKLGHLKRHKLNHTGDKPYQCDVCKMCFKESGTLKNHALIHAGEKPYQCDICKIYFRQSSTLKRHYLTHTKERPHRCEVCNSCFRQPAALNRHKLIHTGEKPHQCNICEMRFSEFSALKKHTYIHEGVKPYQCDVCKMWFRQSDNLKKHKLTHTGEKPHQCDICKMCFRQPGTLNRHKLTHTGVKPYQCDVCKLFFRQLDTLNRHKLTHTGEKPHRCDVCEMCFRQSKHLKSHKLKHTVETLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -