Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754474.1:6738660-6743650[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.7 1.3e+03 0.1 0.0 19 43 269 293 264 299 0.82

2 11 4.1 3.1e+03 -1.1 0.0 26 43 304 321 297 330 0.82

3 11 0.36 2.8e+02 2.3 0.1 21 44 327 350 319 358 0.83

4 11 0.14 1.1e+02 3.6 0.0 21 43 355 377 353 387 0.86

5 11 0.0026 2 9.1 0.2 19 43 659 683 654 689 0.87

6 11 0.075 58 4.4 0.3 21 43 689 711 684 718 0.88

7 11 3.5 2.7e+03 -0.9 0.0 25 43 721 739 713 743 0.85

8 11 0.072 55 4.5 0.1 21 44 745 768 734 776 0.84

9 11 0.0014 1 10.0 0.3 21 44 773 796 770 800 0.91

10 11 0.024 18 6.0 0.2 21 43 801 823 797 829 0.89

11 11 1.1e-05 0.0083 16.7 0.0 21 48 829 856 826 858 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.7	1.3e+03	0.1	0.0	19	43	269	293	264	299	0.82
2	11	4.1	3.1e+03	-1.1	0.0	26	43	304	321	297	330	0.82
3	11	0.36	2.8e+02	2.3	0.1	21	44	327	350	319	358	0.83
4	11	0.14	1.1e+02	3.6	0.0	21	43	355	377	353	387	0.86
5	11	0.0026	2	9.1	0.2	19	43	659	683	654	689	0.87
6	11	0.075	58	4.4	0.3	21	43	689	711	684	718	0.88
7	11	3.5	2.7e+03	-0.9	0.0	25	43	721	739	713	743	0.85
8	11	0.072	55	4.5	0.1	21	44	745	768	734	776	0.84
9	11	0.0014	1	10.0	0.3	21	44	773	796	770	800	0.91
10	11	0.024	18	6.0	0.2	21	43	801	823	797	829	0.89
11	11	1.1e-05	0.0083	16.7	0.0	21	48	829	856	826	858	0.94

Sequence Information

Coding Sequence: ATGTGCAGATTATGTCTTGCATCTGATACCTCTGAGACTGATATATTTCTGTTTTCCTCTGATTTGGGGAAAAAAATAGCCGATGTAATAATGGAATGTGTCCCCGTTCAAATTACTAGACATGATAAAAAACCGACCTGTATTTGTCGATTATGTTTCACTCAACTGAAGGAATTTCACCAGTTCCAAATGCAGGCAGTGCGGTCCGATAGAACATTACAATGCAATTTACAACAGTTGAGCGATTGTCATGCGCAGAGCAATGTTGAACCGGGCCTCGAGGAACAAACTGTTAATTCCATAAGTCAGGACTACATCGCTGACGTCACTACAAAGTGTGAACCTTTTGAAATTAGTGATCAGCCAAAACAGGAAGTGGTTACAAATGTTGGCTCAGTAAATAAACTTAACGATGACATATCTATAAAACttgaaatcaaagacgaaccaaCGGATGACAATTATTTAATTCCAGCGCAGTGTGCTGATACAGTTGAAACTCCATCCATATATGATGGTAGTGAAATCAGTTACGTAAATCCGATGTTCGAATTTTGCGATACTAAAGCAGGAAACGTTATGCTTCCCATTAAATTGGAAAATGATTTGATGGAGAAGATACCCATGGAAAAGGTAGAAACTTACATACCGTCCAAACAAGGCGACGGTAGCGTGTGTCCTGAAATAATTGGAAACGTCGAATGTCTTCGTTCTAACGAGGATAATGTGAACAGAACAGAACATCTTACTAAACGACTAAAGTCTCAAGATTCTCGCAATGTTTCATTAACAAAATCAGCAACTTCTACAGGAGAAAAACTGTACCAGTGTGATATTTGTGAAATGTGTTTCATAGAGTCGAAATCTTTAAAGaatcataaattaatacatacaggagagaaactgtataagtgtgacgtttgtcaaatgcatttcaaagatatgtcgaatttaaagAAGCATAGTttaacacatacaggagagaaaccgtaccagtgtgacatttgtaagatgTGTTTCACGCAAAGAGCTTCTTTGAAAGGTCATACATTTATACAtaccggagagaaaccgtaccagtgtgacatttgtaaaaagggTTTCAGAAAGACGAGTGATTTAAAGAatcataaattaacacatacaggagacaaaccgtaccagtgtgatatttgtaaaatgtgtttcacaCATAGAACTTCTTTGAAAGGTCATAAATTtacacatacaggagagaaaccgtaccagtgtgacATTTCTGACAACGATAGAAAGCCGACCTGTATTTGCCGATTATGTTTCACGCAATTGAAGGAATTTCACCAGTTCCAAATGCAGGCAGTGCAGTCTGATAGAACACTACAGCGCTATCTAGAGGAGTTGAGCGATTGTCATGCGCAGAGCAATGTTGAATCGACCCTCGAAGAACAATCTAATACCTTCGAAAGCCAGACCTATAACGCTAATGTCCGTACGAATTGTGAACCTTTTGAAATTAGCGATGAGTTAGATTATTCGCTGTCAAAACAGAAAATGGTTACGAATGTTGGCTCAGTAAATAAACTTAACGATGACATATCTATAAAACttgaaatcaaagacgaaccaacggatgataattatttaattccagCGCAGTGTGCTAACACTGTTGAAACTCTAACCATATATGATGGTAGTGAAATCAGTAGCGAAAATCCGATGTTCGAATTTTGCGATACTAAAGCAGGAAGCGTTATGCTTCCCATTAAATTGGAAAATGATTTGATGGAGAAAATACCCATGGAAAAGGTAGAAACTTACATACCGTCAAAACAAGGCGACGGTAGCCTGTGTCCTGAAATAATTAGAAACGCCGAATGTCTTCGTTCCAATGAAGATGATCTGAACAGAACTGAACATCTTACTAAACCACTAAATTTAAACGAGATACCTCAAGATTCTCgcaatgtattattaaaaaaatcaccaacTTCTACAAGAgaaaaaccgtaccagtgtgacatttgtaaaaagtgtttcagaaAGACGAGTAATTTAAAGAatcataaattaacacatacaggagagaaaccttaCCGGTGTGATATTTGCGAAATGTGCTTCAGACAACCTCatcttttaaaaaaccataaattaacacataccGGAGAAAAACTGTAcaagtgtgacatttgtgaaaTGCGTTTCAGAGTTTTGGGAAATTTAAAGAAACATAGTttaacacatacaggagagaaaccgtaccaatgtgacatttgtaagatgTGTTTCACACAACGAACTTCTTTAAGAGGTCATAAATTTATTCATACAGGAgaaaaaccgtaccagtgtgacatctgtgaaatgtgtttcagacaatCACATCATTTAAAAAGTCATATGTTAACACATACGGGAGAGAAACCTTACAAGTGTGACacttgtcaaatgtgtttcagacaagCGACAACTTTAAACAGACATAATTTAatgcatacaggagagaaaccgcacacgtgtgacatttgtaaaaagtgtttcagttGGTCGGGTAATTTGAAGAGACATATGAAATTAATGCATTCAGAATAG
Protein Sequence: MCRLCLASDTSETDIFLFSSDLGKKIADVIMECVPVQITRHDKKPTCICRLCFTQLKEFHQFQMQAVRSDRTLQCNLQQLSDCHAQSNVEPGLEEQTVNSISQDYIADVTTKCEPFEISDQPKQEVVTNVGSVNKLNDDISIKLEIKDEPTDDNYLIPAQCADTVETPSIYDGSEISYVNPMFEFCDTKAGNVMLPIKLENDLMEKIPMEKVETYIPSKQGDGSVCPEIIGNVECLRSNEDNVNRTEHLTKRLKSQDSRNVSLTKSATSTGEKLYQCDICEMCFIESKSLKNHKLIHTGEKLYKCDVCQMHFKDMSNLKKHSLTHTGEKPYQCDICKMCFTQRASLKGHTFIHTGEKPYQCDICKKGFRKTSDLKNHKLTHTGDKPYQCDICKMCFTHRTSLKGHKFTHTGEKPYQCDISDNDRKPTCICRLCFTQLKEFHQFQMQAVQSDRTLQRYLEELSDCHAQSNVESTLEEQSNTFESQTYNANVRTNCEPFEISDELDYSLSKQKMVTNVGSVNKLNDDISIKLEIKDEPTDDNYLIPAQCANTVETLTIYDGSEISSENPMFEFCDTKAGSVMLPIKLENDLMEKIPMEKVETYIPSKQGDGSLCPEIIRNAECLRSNEDDLNRTEHLTKPLNLNEIPQDSRNVLLKKSPTSTREKPYQCDICKKCFRKTSNLKNHKLTHTGEKPYRCDICEMCFRQPHLLKNHKLTHTGEKLYKCDICEMRFRVLGNLKKHSLTHTGEKPYQCDICKMCFTQRTSLRGHKFIHTGEKPYQCDICEMCFRQSHHLKSHMLTHTGEKPYKCDTCQMCFRQATTLNRHNLMHTGEKPHTCDICKKCFSWSGNLKRHMKLMHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530966;
90% Identity: iTF_01530966;
80% Identity: iTF_01530966;