Xxan020480.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754474.1:6618077-6638406[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0073 5.6 7.7 0.0 17 43 560 586 554 592 0.85 2 7 0.00096 0.73 10.5 0.4 21 44 592 615 589 620 0.89 3 7 0.016 12 6.6 0.3 21 44 620 643 616 651 0.86 4 7 0.0093 7.1 7.4 0.0 21 44 648 671 643 676 0.91 5 7 0.0016 1.2 9.8 0.2 21 48 676 702 673 705 0.92 6 7 0.001 0.77 10.5 0.4 20 48 703 730 701 734 0.88 7 7 0.29 2.2e+02 2.6 0.0 21 45 733 757 729 765 0.83
Sequence Information
- Coding Sequence
- ATGAAGCAGTTAAAAGTAATTGGTTGTGGTTTATCACAAATGTGCAGACTATGTCTGTCTCACGATAAAATCACTACATCGGGCGTATTTCTGTTTTCCTCCGAATCGGGAAACGATACAGCCAAAATGGTAATGGAATGTGCTCCTGTTCAAATTACCAGACACGACAAGATGCCGACCTATATTTGTCGATCATGCTTCAATCAACTGAAGAAATTTCACCAGTTCCAAAACCAAATAATACAGTCTGACAAAACATTGCAGCGCTATCTACAGCAGTTGAGCGATTATCCTACTCAGGTCAAAGTTGAATGGGCCCTCGAAGAACCATCTGATGCTTCCGTAAGCCAGACCTCTAATACTGACGTCAATACACGATGTGAACCGTTTGAAATTAGTGACGGGTTTGATATTTGTCATTCAGATCAGAATGAAAATAGCAAAGAAATATCTTTCAAATCTGAAAACAAAGATGAACTAATGGATGacaattcattaataaaaacagaGTGTGCTGACGACGCAGTAGAAAATTTATATGAGAATGATGGTAGTGAAATCAGTTTCGAAGGTTCTATGATAGACATTGGCGAAACAAAAGTAGGTACTTCCGAGGTCAACAAGTGTTCCGTTCAATTTGAAAATAGTATGGCGTACAAAATACAGGTGACATCGGAAGAAACAAACAGTACGCCGCTAGAAAAAGCCGATAGTAGCCTGTTCCCTGAAAATGTTAATGACGAAGAATGTCTTCGGTCCAATGAAGAAATTACACGCCATGATAGTATGCCGACCTGTATTTGTCGATTATGTTTCACTCAACTGAAGAAATTTCACCAGTTCCAAATGCAAGTAATAAAGTCTGACAAAACACTGCAGCGCTATCTACAGCAATTGAGCGATTATCCTACTCAGGTCAAGGTTGAATGGGCCCTCGAAGAACCATCTGATGCTTCCGTAAGCCAGACCTCTAATACTGATGTCGATACACGGTGTGAACCGTTTGATATTAGTGGTGGGTTTGATATTTGTCATTCAAAACTGAATGAAACAGCCAATAGTAGCGCAGTATGTAGAAATAATGAGGAAATATTCttcaaatctgaaatcaaagatGAACCAATCGATGATAATTCATTACTTCCAACAGAGTGGGCTGATGAAATAGCAGAAAGTGTATCCAACGATGATGGTAGTCGAACACCGCATCGCTATCTGCAGCCAATGAGCGGCTGTCATCCGCAGATCGAGGTTGAGTTGGCCCTCGAAGAACATTCAAATAATTCCAAAAGCCAGAACTATAATGCTGATGTCACTACAAAATGTAAACCTTCTGAAATGAGTGATAAGTTTGATTTgcgttatttaaaaaagaaaatgcctttaaaatctaaaatcaaAGATGAACCAATGGAAGATAATTCATTAATTCCAACAGAGTGGGCCGAAGACGGAGTAGAAAATGTATCCAAGGATGATGGAAGTGGAATCAATTGCGAAGTTTCTATGGTCGTCATTGATGATACTAAAGCAGGTGTAAATACATCAGAAATCTTTCAGTATTCtctgaaatttgaaaatgatttGACGGAGAAAATGCCGCagaaattggaagaaacgtgcAATACATCGCTAGAAGAAACCGTGTTCTCTGAAAATTTAAGGAGTAAGCGATCTAAGCGTACAGGAGGGAAGAAACCGtaccaatgtgacgtttgtaaaatggTATTCAGTGAGCCTCATAATTTAAAGCGACATAAATTAattcatacaggagagaaaccataccagtgtgacatttgtcaaatgtgttttaGACACTCAAACACTTTGAAGAGACATatattaaaacatacaggagagaaaccatatcagtgcgaCATTTGTAAAACGTGTTTTATACAAGCGAGCCATTTGAAACGccataaaataatacatacagaggagaaaccatatcagtgtgacgtttgtaaagtAGGATTCAATGAGCCACGCAATTTAAAGAGACATTACTTAATTcacacaggagagaaaccgtaccagtgtgacatttgtaaaatgagTTTTAGGCACTCACATACCTTAAGGAACCACGAATTAAAACATAaaggtgagaaaccataccagtgtgacatttgtaaaatgtgtttcagacaagCGTTTCATTTAAAACgccataaattaaaacatacaacAGAAGAGAAACCGTTTCAGTGCTACATTTGTAATATGGGATTCACAGAGTCGTTTATTTTAAAGAGACATAATTTAATTCACAAaggagagaaaccataccagtgtgaaATTACACGGCACGACAAGATGCCGGCCTATATTTGTCGATCATGTTTCGCTCAACTGAAGAAATTTCACCAGTTCCAAAGACAAGTAATACAGTCTGACAAAACTTTACAGCACTACCTACAGCAAATGACCGATTGTCATACACAGATCAAGGGTTTGACCCTCGAAGAACAACCTGATACTTCCTCAAACCAGACCTCTAATACTGATGTCAATAAACGGTGTGAACCCTTTGAAATTAGTAATGGGTTTGATATTTGTCATTCAAAACAGAATGAAACAGCCAATAGTAACGCAGTATCTAGAAACACTGAAGAAATATTCtttaaatctgaaatcaaagatGAACCAATCGATGATAATTCATTACTTCCAACAGAGTGGGCTGATGAAACAGCAGAAAGTGTATCCAACGATGATGGTAGTGGAACACCGCATCGCTATCTGCAGCCAATGAGCGTATGTCATCCGCAGGTCGAGGTTGAATTGGCCCTCGAAGAACATTCAAATAACTCCAAAAGCCAGAACTATAATGCTGATGTCACTACAAAATGTGAACCTTCTGAAATGAGTGATAAGTTTGATTTGCGTTATTCAAATAAGAAAATGCCTTCAAAATCTAAAATCAAAGATGAACCAATGGAAGATAATTCATTAATTCCAACAGAGTGGGCTGAAGACGGAGTAGAAAATTTATCCAAGGATGATGGAATCAATTGCGAAGTTTCTATGGTCGTCATTAACGATACTAAAGCAGGTTGcagcgctgacaatttgctacgCGCGTATAGCTACGTCGCGCTGACGGGAATCGTCGGTGTATTGCCGGTGGACCGACGAGCAATGAAAATGTATGAACGCATTTAG
- Protein Sequence
- MKQLKVIGCGLSQMCRLCLSHDKITTSGVFLFSSESGNDTAKMVMECAPVQITRHDKMPTYICRSCFNQLKKFHQFQNQIIQSDKTLQRYLQQLSDYPTQVKVEWALEEPSDASVSQTSNTDVNTRCEPFEISDGFDICHSDQNENSKEISFKSENKDELMDDNSLIKTECADDAVENLYENDGSEISFEGSMIDIGETKVGTSEVNKCSVQFENSMAYKIQVTSEETNSTPLEKADSSLFPENVNDEECLRSNEEITRHDSMPTCICRLCFTQLKKFHQFQMQVIKSDKTLQRYLQQLSDYPTQVKVEWALEEPSDASVSQTSNTDVDTRCEPFDISGGFDICHSKLNETANSSAVCRNNEEIFFKSEIKDEPIDDNSLLPTEWADEIAESVSNDDGSRTPHRYLQPMSGCHPQIEVELALEEHSNNSKSQNYNADVTTKCKPSEMSDKFDLRYLKKKMPLKSKIKDEPMEDNSLIPTEWAEDGVENVSKDDGSGINCEVSMVVIDDTKAGVNTSEIFQYSLKFENDLTEKMPQKLEETCNTSLEETVFSENLRSKRSKRTGGKKPYQCDVCKMVFSEPHNLKRHKLIHTGEKPYQCDICQMCFRHSNTLKRHILKHTGEKPYQCDICKTCFIQASHLKRHKIIHTEEKPYQCDVCKVGFNEPRNLKRHYLIHTGEKPYQCDICKMSFRHSHTLRNHELKHKGEKPYQCDICKMCFRQAFHLKRHKLKHTTEEKPFQCYICNMGFTESFILKRHNLIHKGEKPYQCEITRHDKMPAYICRSCFAQLKKFHQFQRQVIQSDKTLQHYLQQMTDCHTQIKGLTLEEQPDTSSNQTSNTDVNKRCEPFEISNGFDICHSKQNETANSNAVSRNTEEIFFKSEIKDEPIDDNSLLPTEWADETAESVSNDDGSGTPHRYLQPMSVCHPQVEVELALEEHSNNSKSQNYNADVTTKCEPSEMSDKFDLRYSNKKMPSKSKIKDEPMEDNSLIPTEWAEDGVENLSKDDGINCEVSMVVINDTKAGCSADNLLRAYSYVALTGIVGVLPVDRRAMKMYERI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531333;
- 90% Identity
- iTF_01531333;
- 80% Identity
- iTF_01531333;