Xxan022534.2
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:16745713-16747434[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0016 1.2 9.8 0.0 21 43 328 350 323 355 0.90 2 6 0.0054 4.1 8.1 0.1 21 44 356 379 353 383 0.91 3 6 0.017 13 6.5 0.4 21 43 384 406 381 411 0.90 4 6 1.1e-06 0.00086 19.9 0.3 21 44 412 435 409 443 0.87 5 6 0.014 11 6.7 0.2 21 46 440 465 438 471 0.85 6 6 0.38 2.9e+02 2.2 0.0 21 43 468 490 463 495 0.86
Sequence Information
- Coding Sequence
- atggagcATTTAAAAGTAACTGCCTATGATTTAACGCAAATGTGTAGATTATGTTTATCACACGATATGACTACGACTGATATATTTCGGTTTTCCTCAGAATTGGGAAAAGAAGTAGCAGATATAATAATGCAATGTGCTCCCGTTCATATTACCAGAGACGACAGGATGCCGACCAACATTTGTAAATTATGTTTCACTCAGTTGAAAAACTTTCACCGGTTCCAAATGCGAGTTGTACAATCAGATAGAACACTGCAGCGTTATCTACAGCAGTTGAACAACTGTGATCCGCAGATCAAGGTTGAATGGATCGTTGAAGAACCGTACAAAAATCGAATAAACCAGAACTCTAGTGCTGATATTGCAAAATGCGAACCTGTTAAAATTGGCGAagagcttgatttttttaacacaaaacaGAAGGTTCCTGCAAATTTTTGCCCAGTTAAAAGCATTAAcgaggaaatatttttaaaaacagaaatcaaagtTGAACCAATGAGTGATAACTCATTAATTCCAATAGAGTGTGCTGATGACCCATTAGAAACATTAATTGCGGGTGATAGTAGTGAAATCAGTATTGACGattcaaaaattgatttaggcGATGATAAAGTGACTGTAGATACGTCGAAGAATTTTGAATGTACTCTTAAATTAGAAAATGGTTTAAGCAAGAAATTATCTGAGAAACtggaaaaaacatttaatactgctataaaagaAGTCGATAATAGCACCAACCATACTTCAAGTGCTTTATATACCAGTGACGGCAGAAAAACTAGCCTTGAAATTGTTAAAGATGTTAAAAGTCGCTCTTCTAACAAGAATGAGAATAAAACTAAGAATCCttctaaacataaaaaaatcaacgagAAGTTTTATGCAGGTGAAAAGCAGTTTCAGTGTGATCTCTGTAAAATGTGCTTTTCGAAATCTTatactttaaaaattcataaattaattcattcaggagagaaaccgtaccagtgtgacttTTGCAAACAAATTTTTAGACAGTTGGGCAATTTGAACAGACACAAATTAACACATACGGGAGAAAAACCGCACcgatgtgacatttgtaatatatGTTTCAGAGATCcaggtaatttaaaaaaacattatttaattcatacgggagagaaaccgtaccgaTGTGACGTCTGTAAACAGTGTTTTAGACTTTCAAGAGTTTTGAAAAACCATAAACTAATTCATACTGAAGAAAAACCCTACACGTGTGGCGtatgtcaaatgtgtttcagaaACTCGCGTAATTTAAAGAGACATAATTTAGTTCACacaggtgagaaaccataccagtgtgatatttgtaaaaagtgtttcagagACTCGTGTACTTTAAAGACCCATAATTCAATTCACACAGGTGAGAAGCCGTACCAATGTGATGTTTGTAAACAATGGTTTAGACTTTTAGACGGTTTGAAAAGACACAAATTAATGCATACAGAATAA
- Protein Sequence
- MEHLKVTAYDLTQMCRLCLSHDMTTTDIFRFSSELGKEVADIIMQCAPVHITRDDRMPTNICKLCFTQLKNFHRFQMRVVQSDRTLQRYLQQLNNCDPQIKVEWIVEEPYKNRINQNSSADIAKCEPVKIGEELDFFNTKQKVPANFCPVKSINEEIFLKTEIKVEPMSDNSLIPIECADDPLETLIAGDSSEISIDDSKIDLGDDKVTVDTSKNFECTLKLENGLSKKLSEKLEKTFNTAIKEVDNSTNHTSSALYTSDGRKTSLEIVKDVKSRSSNKNENKTKNPSKHKKINEKFYAGEKQFQCDLCKMCFSKSYTLKIHKLIHSGEKPYQCDFCKQIFRQLGNLNRHKLTHTGEKPHRCDICNICFRDPGNLKKHYLIHTGEKPYRCDVCKQCFRLSRVLKNHKLIHTEEKPYTCGVCQMCFRNSRNLKRHNLVHTGEKPYQCDICKKCFRDSCTLKTHNSIHTGEKPYQCDVCKQWFRLLDGLKRHKLMHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531320;
- 90% Identity
- iTF_01531320;
- 80% Identity
- iTF_01531320;