Xxan020430.2
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754474.1:5701023-5703888[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00069 0.53 11.0 0.4 18 44 253 279 248 284 0.86 2 8 0.00052 0.4 11.4 0.1 21 43 284 306 282 312 0.90 3 8 0.023 17 6.1 0.1 21 44 312 335 309 343 0.86 4 8 0.22 1.7e+02 2.9 0.4 21 43 340 362 338 374 0.83 5 8 0.027 21 5.9 0.3 12 43 375 408 366 414 0.73 6 8 0.0049 3.7 8.3 0.0 21 44 414 437 411 442 0.91 7 8 0.00029 0.22 12.2 0.3 21 44 442 465 439 470 0.89 8 8 0.012 8.9 7.0 0.7 21 43 470 492 467 497 0.91
Sequence Information
- Coding Sequence
- ATGCAACAATTAAAAGTAACTGATAATGGTTTTCACCAAATGTGCAGATTATGCCTATCAGGCGATCTGAGTAAAAcagacatatttttgttttcctcTGAATTTGGGAAACAAATAGCTGACATAATAATGGAATGTGTTCCCGTTCACATTACCAGACACGATAGGATGCCGGCCTGTATTTGTCAGTTATGTTTCACTCAACTGAAGAAATTTCACCAGTTTCAAATGCAAGCAGTACAATCTGATAGAACACTGCAGCGCTATCTACAGCCTTCGAGAGACTGTCATCCTCAGATCAATGTTGAATCGACCCTCGGAGAACAATCTAATAATTCCGTAAGTCGGAATTACAATGCTGAACCTTTCGAAAATAATGACGCAATTAATTTTGTCCATTCGAAATCGAAAgtacatgaaaataaatttaacgagggaatattttttaaatccgaaatcaaagacgagCCAATGGATGATGATTCATTATCTCCAACAGAGTGTGTTGACACACTGCAAATTTTATCTAAAGATGGCGGTAGCGAAGATTCAGTGACGGCTTTTGACGATACTAAAGCAGGTGTAGAAACGCCGAGAAATGTTGAGTGTATGACTGAGAAGATATTTGTGAAATCAGAAGAAACATACGAGTACTTACCGTTTAAAGATGGCGTCGAAGATAATTCGAACAGATCTGAACATCCTGGTGAAAATCAAACTTTCAACTTTCGaaagatattattaaaaaagtcagcGGCTTCAACTGAAAATAAACCTCACCGATgcgacatttgtcaaatgtgtttcagtaaatcgagcaatttaaaaagacATACATTAATACATACAGGGGAGAAACCCTACCAGTGTGAGATTTGTCAAATGCTTTTCAGAGAGGCgcgcaatttaaaaattcataatttaatacaCACCGGGGAGAAACCGTTCCAGTGTGAGATTTGCAAAATGTGTTTTAGAACGGCGCACACTTTAAAGAAACACAAtttaatacatacaggagagaaaccgtaccaatgtgacgtttgtcaaatgtgtttcagacataccatttcattaaaaaatcataaactaGAGCATACCGGAGAGAAACAACCTGGTAAACATCAAAAGTGTCGCGGCTTAAAGAAGTCGGCTGGTAAAAAAACTTACCAGTGTGGCGTTTGTCAAATGCGTTTCACCAAGtcgagcaatttaaaaagacATAACTTAATACATACAggggagaaaccgtaccagtgtgacatttgcaaACTGTGTTTCAATGAGTCGGGCAAtttaaagaaacatattttaatacataccggagagaaaccgtaccagtgtgagaTTTGCAAGAAGTGTTTCAGACAGTCGCAAACTTTAaagaaacataatttattacataCGGGGGAGAGGCCTTACAAGTGCagtatttgtaaaaagtgttacaGACGTTCAACGTCTCTAAAGAAACATAGTTTAGTTCACACAGAAGATAATCCATAA
- Protein Sequence
- MQQLKVTDNGFHQMCRLCLSGDLSKTDIFLFSSEFGKQIADIIMECVPVHITRHDRMPACICQLCFTQLKKFHQFQMQAVQSDRTLQRYLQPSRDCHPQINVESTLGEQSNNSVSRNYNAEPFENNDAINFVHSKSKVHENKFNEGIFFKSEIKDEPMDDDSLSPTECVDTLQILSKDGGSEDSVTAFDDTKAGVETPRNVECMTEKIFVKSEETYEYLPFKDGVEDNSNRSEHPGENQTFNFRKILLKKSAASTENKPHRCDICQMCFSKSSNLKRHTLIHTGEKPYQCEICQMLFREARNLKIHNLIHTGEKPFQCEICKMCFRTAHTLKKHNLIHTGEKPYQCDVCQMCFRHTISLKNHKLEHTGEKQPGKHQKCRGLKKSAGKKTYQCGVCQMRFTKSSNLKRHNLIHTGEKPYQCDICKLCFNESGNLKKHILIHTGEKPYQCEICKKCFRQSQTLKKHNLLHTGERPYKCSICKKCYRRSTSLKKHSLVHTEDNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531190;
- 90% Identity
- iTF_01531190;
- 80% Identity
- iTF_01531190;