Xxan020435.2
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754474.1:5775775-5780639[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.26 2e+02 2.7 0.0 19 43 293 314 285 321 0.71 2 25 1.5 1.2e+03 0.3 0.0 26 47 325 346 322 351 0.84 3 25 0.048 37 5.1 0.1 21 43 348 370 345 376 0.90 4 25 0.044 34 5.2 0.1 21 44 376 399 373 407 0.87 5 25 0.049 38 5.0 0.0 21 48 404 430 401 432 0.88 6 25 0.055 42 4.9 0.6 21 43 432 454 427 465 0.85 7 25 0.00041 0.31 11.7 0.0 21 48 488 514 475 517 0.87 8 25 0.13 1e+02 3.7 0.2 22 43 664 685 656 691 0.75 9 25 0.055 42 4.9 0.1 21 47 691 717 688 723 0.85 10 25 0.64 4.9e+02 1.5 0.1 21 45 719 743 715 751 0.84 11 25 0.082 63 4.3 0.1 21 43 747 769 740 775 0.90 12 25 0.041 31 5.3 0.1 21 44 775 798 772 807 0.87 13 25 3.3 2.5e+03 -0.8 0.1 21 43 803 825 800 830 0.80 14 25 0.036 27 5.5 0.2 23 47 833 856 827 859 0.83 15 25 0.2 1.5e+02 3.1 0.2 19 43 1001 1022 993 1028 0.71 16 25 0.0068 5.2 7.8 0.1 21 43 1028 1050 1025 1056 0.89 17 25 0.00076 0.58 10.8 0.1 21 44 1056 1079 1052 1087 0.86 18 25 0.11 85 3.9 0.2 21 44 1084 1107 1081 1115 0.86 19 25 1 7.7e+02 0.9 0.1 22 43 1113 1134 1109 1139 0.77 20 25 0.00091 0.7 10.6 0.2 21 43 1140 1162 1134 1167 0.90 21 25 0.089 68 4.2 0.1 21 43 1168 1190 1166 1197 0.86 22 25 0.61 4.6e+02 1.5 0.0 21 48 1293 1319 1285 1325 0.84 23 25 7.1 5.5e+03 -1.9 0.0 21 32 1321 1332 1316 1347 0.75 24 25 4.6e-05 0.035 14.8 0.4 21 45 1349 1373 1338 1382 0.85 25 25 1.9 1.4e+03 -0.0 0.0 21 43 1377 1399 1374 1404 0.83
Sequence Information
- Coding Sequence
- atggaacAGTTAAAAGTAATTGGTAATAGTATAACTCGAATGTGCAGATTATGTCTGTCACACGATGTGATTATGGATGACGTGTTTTGGTTTTCTTCCGAATTAGGAAAGAAAATAGCGGATATTATAATGGAATGTGCTCCGGTTCGAATTACCAGACAAGATAAGATGCCGACCTGTATTTGTCAATTATGTTTCAATCAACTGAAGAAATTTCACCAGTTTCAAATGCAAGCAGTGCGGTCTGATAGAACACTACAGCGCTATCTACATCAGTTGAGCGACTGTCGTCGTCACAACGAAGTTGAGTTGACCAACGACGAACAATCTGATAATTCCGAAAGTCAGACTTATAACACTGCTACGAAGTGTGACCCTTTGGAAATTAGCGATGAGTTTGataatttttcatcaaaacaTAAAGTGCTTGCAAATTTTACCTCAGTAAATAGAGTTAACGTggaaatatctttaaaatccgaaatcaaagacgaaccaatggatgataataattctttaattcTAACAGAGTGTGCTGACACAGCAGAAACTCTATCAATGTATGATAGTGGTAAAAACAGTTGCGAAGATTCAATGATCGAAGTTGGCGATACAAAAGTAGGAAACTTTGAGTGCCccattaaatttgaaattaatacgACAGAGAAAATACCCCTGAAAAAGAAAGAAACTTACATACCGTTAAAAGATGACGATAGTAGCCTGTGGTCTGAAAATGTTAAAGACGTCGAAGGTCTTCGTTCTTTTGAAGATAATTTGAACGGAACTGAACGTCCTagtaaacgtcaaaatttaaacGATAAATTACACGACTTTCACTCCGAACTTTTAAAACAATCAGCAACTTCTACTGAGAGTAAATCTCACCAATGCGATATTTGCCAAATGTGTTTCAGTAAGTCGGGCAATTTAAAGAATCATAAATTAACGCATACAGGAGTGAAACGGTacaagtgtgacatttgtcaaatgcgTTTCAGACATAGTGGTCTTTTAAAAAGTCATCTTTTAATACATTCAGGAgaaaaaccgtaccagtgtgacctttgtaaaatgtgttttagaCAATTGGGTCACTTAAAAAGACATAAATTAAtccatacaggagagaaaccatatcagtgtgacatttgtaaaatgtgtttcgcGGAGTCGAGTAAATTAAAGAGACATAGTTTCATAcacacaggagagaaaccataccagtgtgacatttgtaaaatgtgtttcacgGAGTCGGGTACTTTAAAGAGAcacaaattaaaacatacaggagagaaaccataccagtgtgacatttgtaaaacgTGTTTTAGACAATTGTGTCacttaaaaagtcataaattaacacatacaggagagaagccatatcagtgtgactttTGTAAAATGCGTTTCGCTGAGTTGGGTACATTAAAGAGACATAAATTCGTACATACCGGAGAGAAACcctaccagtgtgacatttgtaaaatgggTTTCAGACAAGCACAGAATTTTAAAAGGCATAAGTTAAAACATGCACAAAATTTTAgctcagtaaataaaataaacgaggAAATATCTCTTAAATCTGAATTTAAAAACGAACCAATGAAtgaaattaattcattaattctAGCTGAGACTGTTGAAACAGTAAAATCTCTATCAATTCATGACGGTAATGAAATCAGTTGCGAAGATTCAATGATCGAAATTGACGATACAAAAGTAGGAAACTTTGAGTGCCccattaaatttgaaattgataCGACAGAGAAAATACCCCTGAAAAAGGAAGAAACTTACATACCGTTAAAAGATGACGATAGTAGTCTGTGCCTCGATAATGTTAAAGACGTCGAAGGTCTTTGTTCTTTTGAAGATAATTTGAACAAAACCGAACATCCTagtaaacgtcaaaatttaaacGATAAATCACACGACTTTCGCGACTTGTTAAAACAATCAGCAAATTCTACTGAAAGTAAATCTCACCAATGTGACATTTGCCAAATGTGTTTCAAACAGTCTACGACTTTAAAGAATCATAAATTAacgcatacaggagagaaaccgcaccaatgtgacatttgtaaaatgcgTTTCAGACAAACTGGTCTTTTAAAAAGTCATATATTAATACATACAGGGgaaaaaccgtatcagtgtgacatttgtaaatatCGTTTTAGACTATTGGGTCACTTAAAAAGACATAAAGtaatacatacaggagagaaaccgtaccggtgtgacatttgtaaaatttgtttcaCGGAGTCGGGTTCTTTAAAAAGACATAATTTAATACATACCGGAGAGAAACCAttccagtgtgacatttgtaaaatgtgtttcagagAGGCGTCCAAGTTGAGAAGTCATAAATTCGTACATACCGGAGAGAAACcctaccagtgtgacatttgtaaaatgaattTCATACAACTGGCTCACTTAAAAACACATAAACTacaacatacaggagagaaacgattcgagtgtgatatttgtaaaaagtgtttctgtcaatctaagaatttaaaaatgcataaattgaAACATACACAATATTTAAgctcagtaaataaaattaacgaggAAATATCTCTTAAATCTGAATTTAAAAACGAACCAATGGatgaaaataattcattaattctAGCTGAGAGTGTTGAAACAGTAAAAACTCTATCAATTCATGACATAAATGAAATCAGTTGCGAAGATTCGATGATCGAATTTGGCGATACAAAAGTAGGAAACTTTGAGTGccccaaaaaatttgaaattgatgCGATAGAAAAAATACCCCTGAAAAAGGAAGAAACTTACATACCGTTAAAAGATGAAAATGTTAAAGACGTCGAAGGTCTTTGTTCTTTTGAAGATAATTTGAACGGAACCGAACACCCTagtaaacgtcaaaatttaaacGATAAATCACACGACTTTCGCGACGAATTGTTAAAACAATCAGCAACTTCTACTGAAAGTAAATCTCACCAATGCGATATTTGCCAAATGTGTTTCAGTAAGTCGAGCAATTTAAAGAATCATAAATTAacgcatacaggagagaaaccgcacCAGTGTGACATATGTCAAATGTTTTTCAGACAGTCTGCGACattaaataatcataaattaacgCATACAGTGgaaaaaccgtaccagtgtgacatttgtaaaatgtgttttagaCTATCGGGTAACTTAAAAAgacataaattaatacatacaggagagaaaccataccagtgtgacatttgtaaaaggTGTTTCGCGATGTCGCGTACTCTAAAGGCACATAAtttaatacatacaggagagaaaccacaccagtgtgacatttgtaaaatgtgttttagaCTATTggatcaattaaaaaatcataaattaacacatacaggGGAGAAACCATACGAGtgttatatttgtaaaatgcgttTCAGTCAATCACAGAATTTAAAAAGgcataaattaacacataccggagagaaaccccaccagtgtgacatttgtaaaaagggTTTTAGACGAGCACAGAATTTGATAGggcataaattaaaacatacacaATATTTTAgcttagtaaataaaattaacgaggAAATATCtctaaaatccgaaatcaaaaACGAGCCAATGGATGATAGTAATCCTTTAAGTCTAACAGAGTGTGCTGATACAGCAGAAACTCTATCTATGTGTGATGATGGAGAAATCAGTAGCGAAAATCCAATGTTCGAATTTTGCGATACTAAAGCGGGAAACGTTATTTGTcctattaaatttgaaaatgataTGACGTCCCAGAAATCTGAAGAAAATTACACACATTCAAAAAAACACGTTGTTACACATGCAGAAGAGAAGCCGTACAtgtgtgatatttgtaaaatgggTTTCAGAAAAATGGCTTACTTAAAAACTCATAAGctaaaacatacaggagaaaaaccgtaccagtgtgacatttgtaaaatgcgTTTTGCTGAGTTGGGTACTTTgaagaaacataatttaatacatacaggggagaaaccataccaatgtgacatttgtaaaatgtgtttcagacaagCACAGAATTTAAAAAgacataaattaatacatacaggagagaaaccataccagtgtgacatttgtaaaatgggTTTCACTCGATCGAATTATTTAAAGATTCATCAATTAAAACAcacgcaataa
- Protein Sequence
- MEQLKVIGNSITRMCRLCLSHDVIMDDVFWFSSELGKKIADIIMECAPVRITRQDKMPTCICQLCFNQLKKFHQFQMQAVRSDRTLQRYLHQLSDCRRHNEVELTNDEQSDNSESQTYNTATKCDPLEISDEFDNFSSKHKVLANFTSVNRVNVEISLKSEIKDEPMDDNNSLILTECADTAETLSMYDSGKNSCEDSMIEVGDTKVGNFECPIKFEINTTEKIPLKKKETYIPLKDDDSSLWSENVKDVEGLRSFEDNLNGTERPSKRQNLNDKLHDFHSELLKQSATSTESKSHQCDICQMCFSKSGNLKNHKLTHTGVKRYKCDICQMRFRHSGLLKSHLLIHSGEKPYQCDLCKMCFRQLGHLKRHKLIHTGEKPYQCDICKMCFAESSKLKRHSFIHTGEKPYQCDICKMCFTESGTLKRHKLKHTGEKPYQCDICKTCFRQLCHLKSHKLTHTGEKPYQCDFCKMRFAELGTLKRHKFVHTGEKPYQCDICKMGFRQAQNFKRHKLKHAQNFSSVNKINEEISLKSEFKNEPMNEINSLILAETVETVKSLSIHDGNEISCEDSMIEIDDTKVGNFECPIKFEIDTTEKIPLKKEETYIPLKDDDSSLCLDNVKDVEGLCSFEDNLNKTEHPSKRQNLNDKSHDFRDLLKQSANSTESKSHQCDICQMCFKQSTTLKNHKLTHTGEKPHQCDICKMRFRQTGLLKSHILIHTGEKPYQCDICKYRFRLLGHLKRHKVIHTGEKPYRCDICKICFTESGSLKRHNLIHTGEKPFQCDICKMCFREASKLRSHKFVHTGEKPYQCDICKMNFIQLAHLKTHKLQHTGEKRFECDICKKCFCQSKNLKMHKLKHTQYLSSVNKINEEISLKSEFKNEPMDENNSLILAESVETVKTLSIHDINEISCEDSMIEFGDTKVGNFECPKKFEIDAIEKIPLKKEETYIPLKDENVKDVEGLCSFEDNLNGTEHPSKRQNLNDKSHDFRDELLKQSATSTESKSHQCDICQMCFSKSSNLKNHKLTHTGEKPHQCDICQMFFRQSATLNNHKLTHTVEKPYQCDICKMCFRLSGNLKRHKLIHTGEKPYQCDICKRCFAMSRTLKAHNLIHTGEKPHQCDICKMCFRLLDQLKNHKLTHTGEKPYECYICKMRFSQSQNLKRHKLTHTGEKPHQCDICKKGFRRAQNLIGHKLKHTQYFSLVNKINEEISLKSEIKNEPMDDSNPLSLTECADTAETLSMCDDGEISSENPMFEFCDTKAGNVICPIKFENDMTSQKSEENYTHSKKHVVTHAEEKPYMCDICKMGFRKMAYLKTHKLKHTGEKPYQCDICKMRFAELGTLKKHNLIHTGEKPYQCDICKMCFRQAQNLKRHKLIHTGEKPYQCDICKMGFTRSNYLKIHQLKHTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -