Xxan005193.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754466.1:1990675-2000783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 2.4 9.3 4.6 2 23 228 251 227 251 0.91 2 11 6.5e-05 0.0013 19.5 1.0 1 23 496 518 496 518 0.99 3 11 0.088 1.8 9.7 3.1 1 21 522 542 522 543 0.95 4 11 0.00036 0.0073 17.2 3.2 1 23 547 569 547 569 0.94 5 11 0.0003 0.0061 17.5 3.4 3 23 592 613 591 613 0.97 6 11 0.0024 0.049 14.6 0.2 2 23 619 640 618 640 0.97 7 11 0.00032 0.0065 17.4 3.9 1 23 645 667 645 667 0.98 8 11 0.0013 0.027 15.4 0.4 2 23 673 694 672 694 0.96 9 11 0.00054 0.011 16.7 3.5 1 23 700 723 700 723 0.96 10 11 0.41 8.4 7.6 0.4 2 23 739 760 738 760 0.95 11 11 0.047 0.96 10.6 3.1 1 23 765 788 765 788 0.94
Sequence Information
- Coding Sequence
- ATGATAGATATTAGACCAGTAAATATATCTGAATTTTCGGATAACTGTACATCGCTGAATGTGAAATGTGACTATTGCAGTGCAGATCATGAAAGTAAAGATTGTTTTATAGTTGTAGAACCGCAAGTCATCAATGATTCAAAGATTCCAACGAGGGCTACACTAACATTACCTCCTCACTTAAAGGTTGTTAATATGTCAGACGGGACAACCAATGTAATAGCTAACGTTCTACTGCCTCGAGGGGTCCGATTTGgtCCGTATCAAGCGAAGAAGGTTAGATTAGCAGTACCATCTTCAACGTtcccattaaaaatatttagagaAAATGTAACGGACAGTGAATATTATTTAGATACGACTGACCAAAATTTCTGTAATTGGATGTGTTTAGTAGCCCCAGCTAGTAATGTATCAGAACAGAATGTTATTTGTTATCAGttagaaattgaaatttattattcattaatCAGAGACGTAAATGTCGGTGAAAGTTTAAAAGTATGGTACGCTCCAAATTATGGCGCAAAAATGGAAATTTCACAAGACAAAGAAATCGACACAGTCGAGTACACGCCACAGGTTTGGAACTGTAAGTTCTGTCACAAAATCAAAATGAATACCGCGACATATGCAAAACATCTGAAACAGCATTACGAAGACGCGAATCGGAACAGTAATAAATGCTCTGTTtgtggaaaacattttttttctgtccAGgCTCTTCATAAACACACTAAAAAAATGAACCATTTGGAAGTTTCGCAAATAATAACAGAACAAACTTTTAACAGTTCAGATAACTCAGTTTCAAAACAGTTGACAGTTGATGAGGATACGAGTAATGATTATGATGACACGTCAGAAGCTATGAGAAATATTCTAGAGAAATTTAAAGCTGGTGaatctataaaaacaatttgttctTTATCAGATGTTAGGAGTAatagtgaaaacaaaaatgaaattgacaAAAAGAACAATTGCGAACGAAATGTCAAAACTAGCATTTGTTCTGTAAGTGATAGTTTAGTCGGAGGACAAATTAACGAACAACTTGAAAATACTTCACTTTTGGTTTCATCGTCATCGATAGATAATATGAATTTGAATACGTTGAGTTATTCAGATGAATTGAATAATAGTGTTTTAATCGACAAcgacattaataaatttaacatctTCTCAAAAATATCcgatgtgaaatttaatttggaTTTAGCTAAAGATTCTGATATCGGCGATAGTTTAAATAACGATGCTTTACAAGGAATATCGGCTATTGaacaaaaattacataaaattaacgaAGAAAGAAGTGTAGCtgattttaatttagattttgtggaaaataatgatttggatataataaatatttacgccAAGAAACATTGTAACGACATAGACAATTTAAATGCGATTGTCAATacacaaaatgaaaccgaaaacgataaacaaaaaatttctcATATAGAGGGACCACCATATAAATGCGATATCtgtgataaaaaatttaatttaatcggATACTTGATAcggcacttaaaaaaacattctgCGGAGTTTGTCTGTGACAAATGTTCATGTATTTTTGGTCGAAAAGAAACTCTGATGTCTCATATATGCAAAGAAGCGACCTACAACTGTACTTATTGCAACAAAACATTCTCTGAAAAGACATTGTTAAAGAAACATTCAGAAcaacattttacaaatgtcgaAACAAATTCTCCGAGTAACCAAAAATCTGATACTACAGCGAGAAATAATTTGTGTTGCATTTGCCAGaagacttttaaaaataatagatcttTAACTGAGCACATAAGAATTTTTCACGATAAGACGAGAAGTGTTTGTGAAATATGCGGAGAAGTTTTTAAAGAATACGGAAGACTTAAAATGCATAAACAAACGCATTTAAATATGACATTTACGTGTGATTTTTGtggcaaagtttttaaaaaacggtACCTCTATTCTAAGCATAAATTAACGCACGAAGAACCGCAGATTGAATGCACCGTTTGCCACAAAAAGGTGAAAACAGCTTATGCTTTGTCAGTTCATATGTTATTACATACGGAAGAAAAGAAGTATGCTTGCTCTGAATGCAACAAACAATttatacaaaagaaaaattttctTCATCACATCAACAATTtccataataataacaaaaatataacgaaGATAAATGAAAACGATTTCGTCAGCTGtccaatttgtaataaaaaaattaagAAATCGTGGATACAAAAACACCGTTCAACGGTTCATTCCAACGATAGATTTTCTTGTTGCTATTGCGACAATGCATTTAAACATCCAGTATCGATAAAAAGGCATTTGCTGGCGACTCACAAAGATAAGCAAGCCGAGTGGGACAACGCAGGTTTCATTTGGAATTTATACTCGAAGAGCAACGCAACTTTTCTTGCACAAGAGTCAGATATTTCGAACAGAAATCTTAATAATCCTGACACAGATCAAGAACAAAACCAAGAGTTATGCTTTCTGGACGTACAACATTTTACTGATGCAAGTGAATTTGATATTTCGACAAAAATGGATTTTATTAACGACGATGAAATGCAAAATGAAATTTCTAACCAGACGTCGAATTGTGTAGAATTATTTTCCGAGGTCCCGTTGGAGTCAGATACTGTCGATGTAAATTTGAGTAATGCAAGACCTGACATCCaaatattaagtaatttaaaaatgaaccAGGAAGGAACTATTTTTGAACCGATGTTGAGTTCAGATAATGCAGACGTAATGGACATTCAATCTCTTATTGATCTTCCAAGCAATACCGATGATGGACTTATTACCTTTAACTCGGTAatagaaaattttgataaatcacCGACGAAAGCGGACTTTGCTTTGCAGATGGACGATTCTTCAAAAGacAAGGATATATTTGCGCCTATTAAAATATCCGACAGCTATATGAACATTGATCAAGAAAGTAATTTCGTTTTAGGACAAAATGCGTTTCTTTTAGACGATGAGACTATTATTGAACAGCAAGAAGAAggcaatgttttattttatgttttaaatacgtga
- Protein Sequence
- MIDIRPVNISEFSDNCTSLNVKCDYCSADHESKDCFIVVEPQVINDSKIPTRATLTLPPHLKVVNMSDGTTNVIANVLLPRGVRFGPYQAKKVRLAVPSSTFPLKIFRENVTDSEYYLDTTDQNFCNWMCLVAPASNVSEQNVICYQLEIEIYYSLIRDVNVGESLKVWYAPNYGAKMEISQDKEIDTVEYTPQVWNCKFCHKIKMNTATYAKHLKQHYEDANRNSNKCSVCGKHFFSVQALHKHTKKMNHLEVSQIITEQTFNSSDNSVSKQLTVDEDTSNDYDDTSEAMRNILEKFKAGESIKTICSLSDVRSNSENKNEIDKKNNCERNVKTSICSVSDSLVGGQINEQLENTSLLVSSSSIDNMNLNTLSYSDELNNSVLIDNDINKFNIFSKISDVKFNLDLAKDSDIGDSLNNDALQGISAIEQKLHKINEERSVADFNLDFVENNDLDIINIYAKKHCNDIDNLNAIVNTQNETENDKQKISHIEGPPYKCDICDKKFNLIGYLIRHLKKHSAEFVCDKCSCIFGRKETLMSHICKEATYNCTYCNKTFSEKTLLKKHSEQHFTNVETNSPSNQKSDTTARNNLCCICQKTFKNNRSLTEHIRIFHDKTRSVCEICGEVFKEYGRLKMHKQTHLNMTFTCDFCGKVFKKRYLYSKHKLTHEEPQIECTVCHKKVKTAYALSVHMLLHTEEKKYACSECNKQFIQKKNFLHHINNFHNNNKNITKINENDFVSCPICNKKIKKSWIQKHRSTVHSNDRFSCCYCDNAFKHPVSIKRHLLATHKDKQAEWDNAGFIWNLYSKSNATFLAQESDISNRNLNNPDTDQEQNQELCFLDVQHFTDASEFDISTKMDFINDDEMQNEISNQTSNCVELFSEVPLESDTVDVNLSNARPDIQILSNLKMNQEGTIFEPMLSSDNADVMDIQSLIDLPSNTDDGLITFNSVIENFDKSPTKADFALQMDDSSKDKDIFAPIKISDSYMNIDQESNFVLGQNAFLLDDETIIEQQEEGNVLFYVLNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511518;
- 90% Identity
- -
- 80% Identity
- -