Vnig006990.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- prdm10
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000014.1:8330252-8338913[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.4 94 4.3 1.5 2 23 218 239 217 239 0.95 2 12 0.0059 0.16 13.0 4.5 2 23 249 271 248 272 0.96 3 12 5.1e-05 0.0014 19.5 1.2 1 23 504 526 504 526 0.99 4 12 0.19 5.4 8.2 1.7 1 21 530 550 530 551 0.95 5 12 0.0018 0.051 14.6 2.5 1 23 556 578 556 578 0.94 6 12 0.00039 0.011 16.7 3.4 3 23 597 618 596 618 0.97 7 12 0.00055 0.015 16.3 0.1 2 23 624 645 623 645 0.97 8 12 8.8e-05 0.0024 18.8 3.5 1 23 650 672 650 672 0.98 9 12 0.0034 0.093 13.8 0.8 2 23 678 699 677 699 0.96 10 12 0.00047 0.013 16.5 1.8 1 23 705 728 705 728 0.96 11 12 0.008 0.22 12.6 0.4 2 23 745 766 744 766 0.96 12 12 0.024 0.66 11.1 3.3 1 23 771 794 771 794 0.94
Sequence Information
- Coding Sequence
- ATGATAGATATTACATCAGTAAATATACCAGAATTTTCGGATAAATCTGTATCGTTGAATGTGAAATGTGATTATTGCAGTGCAGATCATGAAAGTAAAGACTGTTTTATACTCGTCGAACCGCAAGTTATCAGCGATTCAAAGATTCCAACGAGGGCTAAGCTAACATTACCACCACATTTAAAAGTTGTTAATATGTCAGATGGAACCACCAATGTAATAGCTAATGTTTTACTTCCTCGAGGAGTTAGATTTGgtcCCTATCAAGCAAGGAAGGTTAAATTAGCAATTCCCTCTATAAcgtttccattaaaaatatttaaagaaaaagaaacaGACAGTGAATATTATTTAGATACaacagaccaaaatttctgtaATTGGATGTGTTTTGTAGCCCCAGCTAATAATCTAACAGAACAGAATGTTATTTGTTATCAGttagaaATTGAGATTTATTATTCATTGATTAGAGACGTAAATGTTGGCGAAACTTTGAAAGTATGGTACGCTCCAAATTATGGCGCAAAAATGggtaaagaattattaaataatgatatATGTACGGGAAaagaagataattttttttctgaaattgAAATTTCACAAGACAAAAAACGCGACACCGTAGAGTATAGTCCTCAGGTTTGGAACTGTAATTTCTGTCATAAAATTGGAATGAATACAGCGATGTATGCAAAACATTTGAAGCAGCATTATAAAGATGCGAATCTTAGCAGTAATAAATGTTCTGTTTgtggaaaacagtttttttctgcCCAGgcTCTACATAAACACACTAAAAAAATCCACCATTTAGAATTTGCACAAATAATATCAGAACAAACGCTTAACAGTTCAGATAACTCAGTTTCAAAACAGTTGACAGTAGATGAAGATACAAGTAATGATTATGATGATACGTCAGAAGCTATGAGGAATATTCTAGAAAAATTTAAAGCTGGCGAatctataaaaacaatttgttcTTTATCAGATGTTAGGAGTGAAAACAAGAATGAAAGTGACAAGAAAAACAATTGCGAACGTACTGTTAAAACAAGCATTTGTTCTGTAAGCGATAGTTTAGTTGGAGGACAAATTAACGAACAACTCGAAAACACGTCACTTTTGGTTTCGTCTTCGTCGATAGATAATATGAATTTGAATACATTGAGTTATTCGGATGACTTGAATAATAGTGTTTTAATTGACAatgacataaataaatttaacattttctcGAAAATATCCGATGTGAAATTTAATTTGGATAAAGATTCTGATATCGGTGataatttaattgaacaaaaaatacataaaattaatgaagAACGAAGTGTAGCtgattttaatttagattttgtagaaaataatgatttGGATATAACGAACATTTACACCAAGAAAAATTGTAACGACATAGATGGATTAAATGCTACCATTGTCAATACACAAAACGAACCTGAAAACGATAAACAAAAGACTATTCATATAGAGGGACCACCTTATAAATGCGATAtctgtgataaaaaatttaatttaattgaatatttaataagacatttaaaaaaacattctggCGAATTTGTGTGTGgaaaatgtttatgtATTTTTGGTCGAAAAGAAACTTTGATGGCTCATATATGCAAAGAAGCAACGACCTACAATTGTAGTTTTTGCAATAAAACATTTCCTGAAAAGAAATTGTTAAAGAGACATTCAGAAcaacattttacaaatgttGAAACAAATCAAAACTCTGAAACTacaccaaaaaataatttatgttgtgTTTGCCAGaagacttttaaaaataatagatctTTAACTGAACATATAAGAATTTTTCACGATAAAAGAAGAAGTGTTTGTGAAATATGCGGggaagtttttaaagaaattgggagtcttaaaatacataaacaaaCACATTTAAATCGGACATTTACCTGTGATTTTTGTggcaaagtttttaaaaaacggagCCTTTATTCTAAGCACAAATTAACGCACGAAGAACCACAGATTGAATGCACCGTTTGCCATAAAAAGGTGAAAACGACGTATGCCTTGTCTGTTCATATGTTATTACATACAAATGAAAAGAAGTATGCTTGCTCGGAATGCAAcaaacaatttatacaaaagaaaaattttctCTATCATATCAACAATTaccataataataacaaaaatttaacagcaaGGAAAGATGCAAACGATTTGGTTAGCTGtccaatttgtgataaaaaaattaagaaatcGTGGTTACAAAAGCATCGTTTAACAGTCCATTCTAATGACAGATTTTCTTGTTGCTATTGCGACAATGTATTTAAACATCCTGTGTCGATAAAAAGGCATTTGCTGGCAACTCACAAAGATAAGCAAGCGGAGTGGGACAACGCAGGGTTCATTTGGAACTTATACTCAAAGAGTAACGCAGCCTTTCAAGCACAAGAATCAAATGTCTTGAACATAGATCAAGAACAGAACCAACAAATATGTTTTCCTGACGTACAACACTTTACTGATGCAAATGAATTTGATATTTCggcaaaaatcgattttattaacgACAGTGAAATGCCAAATGAAATTTCAAACCAAGCATCGAATTGTGTAGAACTGTTTTCGGACGTTGCAATGGAGTTAGATACTGTGGATGGAAATTTAAGTAGTAAAGGAAGACCTGACatccaaattttaaataatttaaagattaaTCAGGAACAAATTAGTTTTGAACCGATGCTGAGTACAGATAATGCAGACGTAATAGATATTCAATCACTTATTGGTCTTCCGAATTCTGATGATGGGCTTATTACTTTTAATTCTGGAATAGATTTTGATAAGTCACCGACAAAAGCGGATTTTGCTTTGCAAATGGACGATTCTTTAAAAGacAAGGATATATTTGCTCCGATTCAAATTTCCGATGGCTATATGAACGTTGATCAAGAAAGTAATTTAGTTTTAGGACAAAATGCGTTTCTTTTAGGTGATGAAACTGTTATTGAACAGCAAGAAGAaggcaatattttattttatgttttagatACGTGA
- Protein Sequence
- MIDITSVNIPEFSDKSVSLNVKCDYCSADHESKDCFILVEPQVISDSKIPTRAKLTLPPHLKVVNMSDGTTNVIANVLLPRGVRFGPYQARKVKLAIPSITFPLKIFKEKETDSEYYLDTTDQNFCNWMCFVAPANNLTEQNVICYQLEIEIYYSLIRDVNVGETLKVWYAPNYGAKMGKELLNNDICTGKEDNFFSEIEISQDKKRDTVEYSPQVWNCNFCHKIGMNTAMYAKHLKQHYKDANLSSNKCSVCGKQFFSAQALHKHTKKIHHLEFAQIISEQTLNSSDNSVSKQLTVDEDTSNDYDDTSEAMRNILEKFKAGESIKTICSLSDVRSENKNESDKKNNCERTVKTSICSVSDSLVGGQINEQLENTSLLVSSSSIDNMNLNTLSYSDDLNNSVLIDNDINKFNIFSKISDVKFNLDKDSDIGDNLIEQKIHKINEERSVADFNLDFVENNDLDITNIYTKKNCNDIDGLNATIVNTQNEPENDKQKTIHIEGPPYKCDICDKKFNLIEYLIRHLKKHSGEFVCGKCLCIFGRKETLMAHICKEATTYNCSFCNKTFPEKKLLKRHSEQHFTNVETNQNSETTPKNNLCCVCQKTFKNNRSLTEHIRIFHDKRRSVCEICGEVFKEIGSLKIHKQTHLNRTFTCDFCGKVFKKRSLYSKHKLTHEEPQIECTVCHKKVKTTYALSVHMLLHTNEKKYACSECNKQFIQKKNFLYHINNYHNNNKNLTARKDANDLVSCPICDKKIKKSWLQKHRLTVHSNDRFSCCYCDNVFKHPVSIKRHLLATHKDKQAEWDNAGFIWNLYSKSNAAFQAQESNVLNIDQEQNQQICFPDVQHFTDANEFDISAKIDFINDSEMPNEISNQASNCVELFSDVAMELDTVDGNLSSKGRPDIQILNNLKINQEQISFEPMLSTDNADVIDIQSLIGLPNSDDGLITFNSGIDFDKSPTKADFALQMDDSLKDKDIFAPIQISDGYMNVDQESNLVLGQNAFLLGDETVIEQQEEGNILFYVLDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531281;
- 90% Identity
- -
- 80% Identity
- -