Xxan021407.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754474.1:16101859-16103628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00081 0.017 16.1 0.8 2 23 97 118 96 118 0.97 2 10 0.0002 0.004 18.0 5.0 1 23 126 148 126 148 0.97 3 10 0.029 0.59 11.2 0.2 1 23 154 177 154 177 0.91 4 10 0.16 3.3 8.9 0.2 2 23 183 205 182 205 0.95 5 10 0.0021 0.044 14.8 0.9 1 23 210 232 210 232 0.98 6 10 0.0041 0.084 13.9 1.9 1 23 237 260 237 260 0.95 7 10 0.00047 0.0095 16.9 0.3 1 23 293 315 293 315 0.98 8 10 0.023 0.47 11.5 2.0 3 23 326 346 325 346 0.99 9 10 0.0002 0.004 18.0 0.9 1 23 352 374 352 374 0.99 10 10 0.0014 0.029 15.3 6.6 1 23 380 402 380 402 0.97
Sequence Information
- Coding Sequence
- ATGAGTAACGCAAAAATctccaaaattaaaaataagattacGGCTGGtcaaaatgaaaacattttgcCCGCCCTTGCAGGTACTAAAAATGAGCAAAACAAAAGCGCCGAGCGCGGTTCACTCGGTGCTGGAAATATATGCGCATCGCCGATAGATTCACGCAAAAACAAAAGCGCCGAGCACGGTTTTATTGGTGCTGAAAATAGATGCGCATCGCCGATAGAATCGAACAGCGAAACCGTACAAAACGACAATAAAATAGACGATACGCGAAATACGAACGACTGGTCTTGCAAAGTGTGcggaaaaaagttgttttacaGATCGGTGTTACTGAGACACATGAATTCGCACCCGGAATACCGTACCAAGCGATTTTTCTGTTCCGTTTGCCAGAAAGGGTTCTGTGAGAAAAGAAATCTTTCGAAACACATGCAACGGCACAAAGGCGAAACAAAATACAACTGCGATTATTGCGGAAAAGGTTTTTACGAAATCGGCGAAATTGCGTATCAcgttaaaaaacaacacgacgCACGGCCGATCGAATGCGAAATCTGTCGAAAACAGTTCATTCTCGACATTCAGCTCGACTTGCACATGAAAAATACACACgttgaaaaaaagtatacaTGCAAAACGTGCGGCAAGGAGCTGAGATCGAGCAAAGCGCTGTTCGGTCACAATTTGACGCACAACACGGATCCGTTCCCTTGCGATCGGTGCGACAAGTGGTTTAAATACGAAAGCAACTTGAAGGAACACGTTAAAGCGTGCCATTTAGGACTCAAGAAAAAGCACATCTGCACAGTTTGTGGTAAGGAGattAAAGATTTGAAACATCACATGGTTCTGAAGCACGCTACAGATCATCCGTACAAATGCACGAACTGCGACAAGGCTTACGCCGAGGAGTGGGCCTTAAAACAACACTTCAAAGTGCACACGGGCGAACTAAACGTGTACAGAGAGCTGTGCCCTTTTTGCGGCAAAAAAATGCACACAACGACCGCGTTACGAATACACTTGCGAACTCACACCGgCGAGCGTCCGTTCAAGTGTACGACGTGCAGCAAAGCGTTTATGGTAAAAGCAAAATTACTGGAACATCAACGGGTCCATACGGGAGAACGGACACACAAATGCCTAACCTGCAGTAAAATGTTCACTACTAAAGAGTGCTTGAAGAAACATCAGGTAGTCCATACCGGTACGTAA
- Protein Sequence
- MSNAKISKIKNKITAGQNENILPALAGTKNEQNKSAERGSLGAGNICASPIDSRKNKSAEHGFIGAENRCASPIESNSETVQNDNKIDDTRNTNDWSCKVCGKKLFYRSVLLRHMNSHPEYRTKRFFCSVCQKGFCEKRNLSKHMQRHKGETKYNCDYCGKGFYEIGEIAYHVKKQHDARPIECEICRKQFILDIQLDLHMKNTHVEKKYTCKTCGKELRSSKALFGHNLTHNTDPFPCDRCDKWFKYESNLKEHVKACHLGLKKKHICTVCGKEIKDLKHHMVLKHATDHPYKCTNCDKAYAEEWALKQHFKVHTGELNVYRELCPFCGKKMHTTTALRIHLRTHTGERPFKCTTCSKAFMVKAKLLEHQRVHTGERTHKCLTCSKMFTTKECLKKHQVVHTGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511575;
- 90% Identity
- -
- 80% Identity
- -