Vnig009103.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000021.1:2648948-2653283[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00067 0.018 16.0 0.8 2 23 123 144 122 144 0.97 2 10 0.00016 0.0045 17.9 5.0 1 23 152 174 152 174 0.97 3 10 0.031 0.85 10.8 0.2 1 23 180 203 180 203 0.91 4 10 0.92 25 6.1 0.2 2 23 209 231 208 231 0.89 5 10 0.0019 0.054 14.5 0.5 1 23 236 258 236 258 0.97 6 10 0.0014 0.037 15.0 1.6 1 23 263 286 263 286 0.95 7 10 0.00052 0.014 16.3 0.3 1 23 319 341 319 341 0.98 8 10 0.0053 0.15 13.2 2.1 3 23 352 372 351 372 0.99 9 10 0.00026 0.0073 17.3 0.8 1 23 378 400 378 400 0.99 10 10 0.0012 0.032 15.2 6.6 1 23 406 428 406 428 0.97
Sequence Information
- Coding Sequence
- ATGATTTACAGTATCTGTCGATCTTTTGTTTCACAGATAAACAAATGCGACGGTTTGCCGAACCAAATCTGTTCTAAATGTTTTGAAGACGTCAAAACATCTTACAATTTTAAACTCCAATCGGAGAGATCCAACGAatttttgcacaaaattatCAACGAGAAAAATCATACGCGTGCCATAATTAAAACCGACATTACGACCGGTCAAAATGAAAACGTAAACACTACGCCTGCGCTTCCAGGTACCGAGAACGACCAAAACAAAAGCGCCGAGCACGGAAACAGATGCGCATCGCCGATAGATTCAATAACTGAAACCGTACccgaaaataaaatagatgataCGCAAAATACGAACGACTGGTCTTGTAAAGTGTGCGGCAAAAAGTTGTTTTACAGATCGGTGTTATTAAGACACATGAATTCACACCCGGAATATCGAACCAAGCGATTTTTTTGTTCTGTCTGTCAGAAAGGCTTCTGTGAAAAAAGAAACCTTTCGAAACACATGCAACGACACAAAGGCGAAACCAAATTCAACTGCGATTATTGCGGGAAAGGCTTTTACGAAATCGGCGAAATCGCGTATCACGTGAAGAAACAACACGACGCACAGCCAATCGAATGCAAACTCTGCCAAAAACAATTCATTCTCGACATTCAACTCGACCTGCACGTGAAAAATACGCACGTCGAAAAGAAGTACGTTTGTAAAACGTGCGGCAAGGAGTTGAGGTCGAGCAAAGCGCTGTTCGGACACAATCTGACGCACAACACTGACCCATTTCCTTGCGAACAGTGCGATAAGTGGTTCAAGTACGAAAGTAATTTGAAGGAGCACGTTAAGGCATGCCATTTAGGACTCAAGAAAAAGCATATTTGCACCGTTTGTGGTAAGGAGATTAAAGATTTGAAACATCACATGGTTTTGAAGCATGCGAAAGATCATCCGTTTAAATGTACAAATTGTGACAAGGCGTACGCCGAGGAGTGGGCCCTCAAACAACACTTCAAAGTACACACGGGCGAACTTAACGTGTACAGAGAACTGTGCCCTTTTTGCGGCAAAAAAATGCACACAACAACCGCATTACGAATACATATGAGAACGCATacaggCGAGCGTCCATTCAAGTGTATGACGTGCAACAAGGCCTTTATGGTAAAAGCAAAATTATTGGAACATCAACGCGTCCACACAGGCGAACGAATACATAAGTGCTTAACGTGCAGCAAAATGTTTACTACTAAAGAGTGTTTGAAGAAACATCAGGTAGTTCATACCGGTACGTAA
- Protein Sequence
- MIYSICRSFVSQINKCDGLPNQICSKCFEDVKTSYNFKLQSERSNEFLHKIINEKNHTRAIIKTDITTGQNENVNTTPALPGTENDQNKSAEHGNRCASPIDSITETVPENKIDDTQNTNDWSCKVCGKKLFYRSVLLRHMNSHPEYRTKRFFCSVCQKGFCEKRNLSKHMQRHKGETKFNCDYCGKGFYEIGEIAYHVKKQHDAQPIECKLCQKQFILDIQLDLHVKNTHVEKKYVCKTCGKELRSSKALFGHNLTHNTDPFPCEQCDKWFKYESNLKEHVKACHLGLKKKHICTVCGKEIKDLKHHMVLKHAKDHPFKCTNCDKAYAEEWALKQHFKVHTGELNVYRELCPFCGKKMHTTTALRIHMRTHTGERPFKCMTCNKAFMVKAKLLEHQRVHTGERIHKCLTCSKMFTTKECLKKHQVVHTGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531241;
- 90% Identity
- -
- 80% Identity
- -