Xxan011012.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754469.1:9752878-9755724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.036 0.74 10.9 1.0 1 13 71 83 71 94 0.80 2 19 0.0013 0.026 15.5 4.7 1 23 97 119 97 119 0.98 3 19 0.41 8.4 7.6 0.7 1 23 125 144 125 144 0.86 4 19 0.1 2.1 9.5 3.1 1 23 150 173 150 173 0.92 5 19 0.46 9.4 7.4 2.4 1 23 178 201 178 201 0.95 6 19 0.32 6.5 7.9 0.2 1 23 210 231 210 231 0.96 7 19 0.00016 0.0033 18.3 1.8 1 23 234 256 234 256 0.98 8 19 0.14 2.9 9.0 1.5 2 23 263 284 262 284 0.96 9 19 7.9e-07 1.6e-05 25.6 2.5 1 23 290 312 290 312 0.98 10 19 2.7 55 5.0 0.4 1 11 425 435 425 447 0.87 11 19 0.00077 0.016 16.2 4.5 1 23 451 473 451 473 0.97 12 19 5.3 1.1e+02 4.1 0.5 1 11 479 489 479 502 0.74 13 19 0.076 1.5 9.9 1.2 1 23 506 529 506 529 0.91 14 19 6.3e-05 0.0013 19.6 0.3 1 23 534 557 534 557 0.97 15 19 5.8 1.2e+02 4.0 0.4 1 10 566 579 566 588 0.59 16 19 0.0002 0.0042 18.0 0.2 1 23 590 612 590 612 0.98 17 19 0.68 14 6.9 3.4 2 23 619 640 618 640 0.96 18 19 1.4e-06 2.9e-05 24.8 2.8 1 23 646 668 646 668 0.98 19 19 0.019 0.38 11.8 0.2 1 23 674 697 674 697 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAGGAAAATACGTGGACACATGATACACATGATGTATGGATGGGCCATATTCTTGAGCCGGaatgtgaaataaaaaagtcgGGAAAAAAGCGCGATTTGACCGGCAAGGAAAAAACGAGGGAACGCAGAAAAAAGTCGACGGTTCATTCGAAGCCGGTTTTGAGATTTAAATTGAAAGCGCTCGTTCCCACGTCGGACGGCAAATACAAATGTAAAATATGCGGCGAGTCGTTCGCTAGCGCCAAACGCTATCATTATTTGAAACACGAAAAGACGCGGCCGTTTAGTTGCGACGTGTGCGGCAAAACGTTTCATCTGAGCTGGCATTTGAACAGTCACAAAAAGTCTCACGACAACACGGAACTGTTTAAGTGCGAGGTGTGCAACAAGGCGGTTAAAAACTTGAAACAGCACCAGATCTTGCACATGAACGTGTTTCCGTTCAGGTGCGAGCCGTGCGAAAAGAATTTCCGTTTCCGATCGGAACTGAAGATTCACAACGAGTCGTGTCACAGCGACGTGAAGCACACGTGCGCCACTTGCGGCAAAACGTACTTGCTCCGCCACAGTTTGAGGGAACACGAAAAGGTCGCCCATAATCCGTTCTACATCGTCAAAATGTTCGATTGCGACGTGTGCGGCCAGAGCGTTCCGAAACGCAATCGAGCCAGGCACATGGAACGGCACATTGGCTATACGTGCGACGTTTGCGGCAAATGCGTGACGACAAAAAAGAGTCTCGATTTGCACTTGCTTCGGCACAGGGGCGAGAAACCGTTGAGCTGTGACGTATGCGGAAATAATTTCGTCAATCTGTACACGCTCACCTGCCATAAGAGGATACACGAGGGCGTCAAGCCGTATAAGTGTACGGAATGCGGGAAATGTTTCCGCCAAAGCGGCAGTCTCAAGATTCACGCGCGACTACATACCGGAGAGCGGCCTTATTCCTGTCAGTTTTGTTCCGATGCATTTGTGAGCAGGACGAACTTAAATCTGAAGACTGAAATCAAAGCCGAAGAAAATACTTGGACCGAATTTACAAATGAGGAATTCTGGACGCGACATGACATCAAAAACGAATCGAAAACAGCCGACGCAAAAGATAGTTCGATATATAAGCGTAGTAAATCTTCacttaataaaatttcacaTAAATCCACATCGAATCTTAGTAAGAGACGGAAAAGTAAACTTTTAAAATCGGGCGACAGAAATAAATCGGCCGTAAGATTTAAGGTTATGTGTCCGATATTGGACGGAAAATACAAGTGCACGGTGTGCAATGAAATTTTCGATAAAATCAATCGCTATCATTATCTCAAACACGAAGAGACGCGGCCATTTAATTGCGACGTCTGCGGCAAATCGTTTCACCTGAACTGGCACTTGCAGAATCACAAAAAAATGCACGAAAACCGCGAGCCATACAAGTGTGACGTGTGTAATAAGTACGTGAAGAGTATCAAGCGGCACAACCTCTACATGCACCGAAACGTGGTGTTCCGTTACAAGTGCGAGCCGTGCAAAAAGGAGTATCGGTTCAGAAGTCAACTGATCACGCACAACGACATCTATCACAACAACATCCGGCACACGTGTCCCGATTGCGGCAAATCTTATCCGACGGTCGGCGGTCTCAACGATCACCGCAACATGACACACAATCCGGACTACGTGGTCAAAACGTTCAAGTGCGACGTTTGCGGCGAGGACGTGCCGAAACGTTTTCGCGCCAAGCACATGGGCAAGCATACGGGCTACACGTGCGACATATGCGGCAAGTTTGTCACGTCGAAAGCTAGCCTCGATCTGCACCTGCTGCGGCACAGGGGCGAGAAACCGCTCAAGTGCGAGATATGCGGCAACAGTTTCCTTCACCTGTACACGTTGAAGTGTCACATGAACATACACGAGGGCATTAAACCCTACAATTGTTCCGAGTGCGGCAAATGTTTCCGGCAGGCGAGCAGTTTGAAAATACACTCCAGAATGCATACCGGGGAGAGACCGTATTCGTGCCCGCTGTGCGCTGACGCGTTTGTTAGCAAAACACTGTTGAATACACACATcaaaaacaaacatggcgttcaagattaa
- Protein Sequence
- MKEENTWTHDTHDVWMGHILEPECEIKKSGKKRDLTGKEKTRERRKKSTVHSKPVLRFKLKALVPTSDGKYKCKICGESFASAKRYHYLKHEKTRPFSCDVCGKTFHLSWHLNSHKKSHDNTELFKCEVCNKAVKNLKQHQILHMNVFPFRCEPCEKNFRFRSELKIHNESCHSDVKHTCATCGKTYLLRHSLREHEKVAHNPFYIVKMFDCDVCGQSVPKRNRARHMERHIGYTCDVCGKCVTTKKSLDLHLLRHRGEKPLSCDVCGNNFVNLYTLTCHKRIHEGVKPYKCTECGKCFRQSGSLKIHARLHTGERPYSCQFCSDAFVSRTNLNLKTEIKAEENTWTEFTNEEFWTRHDIKNESKTADAKDSSIYKRSKSSLNKISHKSTSNLSKRRKSKLLKSGDRNKSAVRFKVMCPILDGKYKCTVCNEIFDKINRYHYLKHEETRPFNCDVCGKSFHLNWHLQNHKKMHENREPYKCDVCNKYVKSIKRHNLYMHRNVVFRYKCEPCKKEYRFRSQLITHNDIYHNNIRHTCPDCGKSYPTVGGLNDHRNMTHNPDYVVKTFKCDVCGEDVPKRFRAKHMGKHTGYTCDICGKFVTSKASLDLHLLRHRGEKPLKCEICGNSFLHLYTLKCHMNIHEGIKPYNCSECGKCFRQASSLKIHSRMHTGERPYSCPLCADAFVSKTLLNTHIKNKHGVQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511329;
- 90% Identity
- iTF_01511329;
- 80% Identity
- -