Vnig000927.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000002.1:4673120-4676053[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.013 0.37 11.9 1.3 1 13 70 82 70 93 0.83 2 19 0.00097 0.027 15.5 4.7 1 23 96 118 96 118 0.98 3 19 0.31 8.6 7.6 0.7 1 23 124 143 124 143 0.86 4 19 0.079 2.2 9.5 3.1 1 23 149 172 149 172 0.92 5 19 0.35 9.6 7.4 2.4 1 23 177 200 177 200 0.95 6 19 0.24 6.5 8.0 0.2 1 23 209 230 209 230 0.96 7 19 6.8e-05 0.0019 19.1 1.9 1 23 233 255 233 255 0.98 8 19 0.11 3 9.0 1.5 2 23 262 283 261 283 0.96 9 19 6.5e-07 1.8e-05 25.5 2.3 1 23 289 311 289 311 0.98 10 19 2 56 5.0 0.4 1 11 418 428 418 440 0.87 11 19 0.00059 0.016 16.2 4.5 1 23 444 466 444 466 0.97 12 19 4 1.1e+02 4.1 0.5 1 11 472 482 472 495 0.74 13 19 0.057 1.6 9.9 1.2 1 23 499 522 499 522 0.91 14 19 4.8e-05 0.0013 19.6 0.3 1 23 527 550 527 550 0.97 15 19 4.4 1.2e+02 4.0 0.4 1 10 559 572 559 581 0.59 16 19 0.00016 0.0043 18.0 0.2 1 23 583 605 583 605 0.98 17 19 0.51 14 6.9 3.4 2 23 612 633 611 633 0.96 18 19 6.7e-07 1.8e-05 25.4 2.8 1 23 639 661 639 661 0.98 19 19 0.014 0.39 11.8 0.2 1 23 667 690 667 690 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAGGAAAATGCTTGGGCAGATACAGATGATGTATGGATGGGCCATATTCTTGAACcggaatttgaaataaaaaaatcgggaaaaaaGCGTAATTTAATCGACAAAGAAAAGAGGAGGGAACGGAGAAAAAAATCGACAGTGCATTCGAAACCAGTGTTGAGATTTAAATTGAAAGCACTTGTTCCTACATCGGATGGAAAAtacaaatgcaaaatatgcggcGAGTCGTTCAGTAGCGCCAAACGCTATCATTATTTGAAACACGAAAAGACGCGGCCTTTTAGTTGCGACGTGTGCGGCAAAACGTTTCACTTAAGCTGGCACTTGAACAGTCACAAAAAGTCGCACGACAACACGGAACTCTTTAAGTGCGAGGTTTGCAACAAGGccgttaaaaatttgaaacaacaCCAGATATTGCACATGAACGTGTTCCCTTTCCGTTGCGAGCCGTGCGAAAAGAATTTCCGGTTCAGATCGGAATTGAAAATTCACAACGAGTCGTGTCACAGCGACGTGAAACACACTTGCGCCACTTGCGGCAAAACGTATTTGCTTCGTCACAGTTTGAGGGAACACGAAAAGGTGGCCCACAATCCGTTTTACATTGTCAAAATGTTCGATTGCGAAGTGTGCGGCCAGAGCGTTCCGAAACGCAATCGAGCCAGGCACATGGAACGACATATTGGATATACGTGCGATATTTGCGGGAAATGCGTTACGACAAAAAAGAGCTTAGATCTCCATTTGCTTCGGCATAGAGGCGAGAAACCGTTGAGTTGTGACGTTTGTGGaaacaattttgttaatttgtacACGCTCACTTGTCATAAAAGGATACATGAGGGCGTTAAACCGTATAAATGTTCGGAATGTGGGAAATGTTTTCGTCAAAGCGGCAGTCTCAAGATTCACGCGCGACTGCATACTGGAGAACGGCCTTATTCGTGTCAGTTTTGCTCCGATGCGAACTTAAATCTGAAGACTGAAATCAAAGCTGAGGAAAATACTTGGACGGAATTTGCAAATGACGAATTGTGGGCGCGACATGACGTCAAAAATGAATCGAAAACAACGGACACAAAAGATAGTTCGATATATAAACGTAATAAAtctctaaataaaatttctcatAAATCTACATCGAATCTTAGTAAGAGACGGAAAAGTAAAACTTTAAAATCAGCCGACAGAAGTAAATCCGGTGTAAGATTTAAGGTTATGTGTCCGATATTGGACGGAAAGTACAAATGCACGGTGTGCAATGAAATTTTCGACAAAATCAATCGTTATCATTATCTCAAACACGAAGAGACGCGACCTTTTAATTGCGACGTCTGCGGAAAATCGTTTCACCTGAACTGGCACTtacagaatcacaaaaaaatgcACGAAAACAGAGAGCCCTATAAATGCGACGTGTGCAATAAATACGTGAAAAGTATCAAGCGTCATAACCTCTACATGCACCGGAACGTGGTGTTTCGCTATAAATGCGAGCCTTGTAAAAAAGAATATCGTTTCAGAAGTCAGCTGATCACACATAACGACATTTATCACAATAACATCCGACATACTTGCCCCGATTGCGGCAAATCTTATCCGACAGTCGGCGGTCTCAACGATCACCGAAACATGACTCACAATCCTGACTATGTGGTCAAAACTTTCAAGTGTGACGTTTGCGGCGAGGACGTGCCGAAACGTTTCCGCGCAAAACACATGGGCAAGCATACGGGCTACACGTGCGATATTTGCGGCAAGTTTGTCACGTCGAAAGCGAGCCTGGACCTGCATCTGTTGCGGCACAAGGGCGAAAAACCGCTCAAGTGCGAAATATGCGGCAACAGTTTTCTTCACTTGTACACGTTGAAATGTCATATGAATATACACGAAGGCATTAAACCGTATAGTTGTTCCGAATGCGGGAAATGCTTTCGCCAGGCGAGCAGTTTGAAAATACACTCGAGAATGCATACGGGAGAAAGGCCCTATTCGTGTCCTCTGTGCGCGGACGCGTTTGTTAGCAAAACTCTGTTGAATACACACATCAAAAACAAACACGGCGTTcaagattaa
- Protein Sequence
- MKEENAWADTDDVWMGHILEPEFEIKKSGKKRNLIDKEKRRERRKKSTVHSKPVLRFKLKALVPTSDGKYKCKICGESFSSAKRYHYLKHEKTRPFSCDVCGKTFHLSWHLNSHKKSHDNTELFKCEVCNKAVKNLKQHQILHMNVFPFRCEPCEKNFRFRSELKIHNESCHSDVKHTCATCGKTYLLRHSLREHEKVAHNPFYIVKMFDCEVCGQSVPKRNRARHMERHIGYTCDICGKCVTTKKSLDLHLLRHRGEKPLSCDVCGNNFVNLYTLTCHKRIHEGVKPYKCSECGKCFRQSGSLKIHARLHTGERPYSCQFCSDANLNLKTEIKAEENTWTEFANDELWARHDVKNESKTTDTKDSSIYKRNKSLNKISHKSTSNLSKRRKSKTLKSADRSKSGVRFKVMCPILDGKYKCTVCNEIFDKINRYHYLKHEETRPFNCDVCGKSFHLNWHLQNHKKMHENREPYKCDVCNKYVKSIKRHNLYMHRNVVFRYKCEPCKKEYRFRSQLITHNDIYHNNIRHTCPDCGKSYPTVGGLNDHRNMTHNPDYVVKTFKCDVCGEDVPKRFRAKHMGKHTGYTCDICGKFVTSKASLDLHLLRHKGEKPLKCEICGNSFLHLYTLKCHMNIHEGIKPYSCSECGKCFRQASSLKIHSRMHTGERPYSCPLCADAFVSKTLLNTHIKNKHGVQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530918;
- 90% Identity
- iTF_01530918;
- 80% Identity
- -