Xxan013221.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754470.1:33981611-33987548[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.076 1.6 9.9 0.4 1 21 170 190 170 191 0.96 2 15 0.0015 0.032 15.2 3.9 1 23 289 311 289 311 0.98 3 15 0.00011 0.0022 18.9 1.4 1 23 317 339 317 339 0.98 4 15 1.3 27 6.0 0.4 3 23 347 367 345 367 0.96 5 15 0.22 4.4 8.5 0.1 2 23 388 409 387 409 0.93 6 15 0.00056 0.012 16.6 0.4 1 23 417 439 417 439 0.98 7 15 0.003 0.061 14.3 1.2 1 23 444 466 444 466 0.95 8 15 0.00033 0.0068 17.3 0.3 1 23 475 497 475 497 0.98 9 15 0.0062 0.13 13.3 0.0 1 23 502 524 502 524 0.97 10 15 1.4e-05 0.00028 21.7 2.6 3 23 530 550 528 550 0.96 11 15 0.0032 0.065 14.2 2.5 1 23 556 578 556 578 0.97 12 15 1.2e-05 0.00025 21.8 1.0 1 23 584 606 584 606 0.98 13 15 0.023 0.47 11.5 1.3 1 23 612 636 612 636 0.97 14 15 0.035 0.71 11.0 0.5 1 23 642 664 642 664 0.95 15 15 0.00034 0.007 17.3 6.8 1 23 670 692 670 692 0.98
Sequence Information
- Coding Sequence
- ATGAATAACATTGAACTGCCCGgtgagttaaataaaatttgcagAACATGCATGTCATTAAGCAATGAattatattctatttttgaAACAACTGATATGCTgggtgaaaatataaaattaagccGTCTATTAATGTCGTGTGCCTCTGTACAGataaatTCTGGCGAAAAGATGCCTTTATCAATGTGTGGAGACTGCATAAATCAATTAAGTAATGCATATCGTTTTAAACGACAGTGTGAAAAAACTGATGCTGATttacgaaaaattttaaaagaatcaCCGTCACCTTTTCAATTTGTAATGAAGCATAGAGATAATAATAACAGTACTTCCTTTCCTGCATTGgataattatagtaaaaatactAGTCAAGAACTAAAATTGGCTGACGTACCAATAGCATGTAATTTATCAGACAAAGTATCTTCGAAAAATATTTCGGTGAAAAATGAATTCTATTGTGACATATGTAAAGATATGTTTAAATGTATACACTTACATGTGTTTAAATGTGATAAATGTAGCAACATTTTTGATACTTTATTGCTACTAAAAGATCATCAGAGACTGTGTAGTTATTTGAATGAAAACGATTTAACCGACGAAGTCAttattaaagaagaaaaatctattgattttgaGGATGGTGCCCAAACAATTGACGAGGAAAAAATTGAAAGCACAGAAAATCAAACGACATTTAATAAACAGTTTGAATATAATCGTCGCTTTTTTATCAATTGGCAAGATGAATCTGTAGGAAGTAGTTCAAACGAAAATTTTGGCGGCCCTTTATTGGAAATTAAAGATGAAAGTTTAGGTCCATGTGAaaatttagataacgtaaaaaataaaaattgtcataCATGCCCAGTTTGTCAAAGAACTTTAAGAACCAGATCAAGTTATTATAAACACTTGATGAGACACAGGAAAGATAAAAAATTTCCATGCACAACTTGCAAagcaattttttgttcaaaagatGCGTTAAAAGAACACATGTTAACACATAAAGATTTCAAATTGATTTTCTGTGATATCTGTAATGAACAATACGATGGCATTAGGAAATTGTTGAAGCATTTTCAGCGACACGTTTCATCATCGGTGCATCTGACTCTAGACAAATTTCAAAACTGCTCAAATGATGAATGGCCTTGTAATATGTGCGCAGAGAAATTCACGTCTATTGCAGAACTAGATAAGCACACGGATGGTCACAGCATTGATAGTTACGGGAATTTTGTTTGTGGTATCTGTGAACAAACCTATTCCGATGGAACAACATTAAAGAAACATTTGAGTACACATGGTATTGAGCCATTTGCATGTAACATTTGTTTTCTCAGTTTTGAAACATGTGCAAGCTTACAAAAACATACAATTGCTCATCAATCTCAAGTATCCAAAACTGCATTCAAGTGTTTACTATGTAAAGAAACTTTCGCAAAGCGTGTTGATTTACAGACTCACATTATCATTCATGCGTCCGATGAGTTTGCATGTGAGCAATGTGGTTTATCATTCGGTATCGAAGCAGCATTCAAGGACCATATAAGAAGCCACTCAATGCCGCATTTGTGTCAGGAATGTGGGACACAATTCCGCACACTTGGAAACTTGCGTTCGCATATGCGTAGACATATTCCTGACCGACCATATGTGTGCAATATTTGCAATAAAGGTTTCAAAGCGAGAACAGTGCTTAAGCATCACAAACTGCGTCACGAAAATATTAAGCCATATGTCTGTACCATCTGCGGATACAGGTGTGTTCAGTCAGGAGACTTGCAGGTTCACATGCGTTTCCATACAGgtgaTAAACCATACGTTTGCACATTCCCTGGCTGCAGTAAACGATTCACCATTTCAAGTCACAGAGCTGAACATGTTCGTAGTCATACCGGTGAAAGGAAGCACATTTGCAACATTTGTAAAAAAGCATTTACTGAAGGCAGAATATTGAAAATTCACATGTTGATACATGGAAATGAAAGACCatttaaatgtgatttttgtGAAAAGACATTTAAACGTAAAGATCATAAAAAAGTTCACATGAAACAGCATatggaaaaaaaagtttaa
- Protein Sequence
- MNNIELPGELNKICRTCMSLSNELYSIFETTDMLGENIKLSRLLMSCASVQINSGEKMPLSMCGDCINQLSNAYRFKRQCEKTDADLRKILKESPSPFQFVMKHRDNNNSTSFPALDNYSKNTSQELKLADVPIACNLSDKVSSKNISVKNEFYCDICKDMFKCIHLHVFKCDKCSNIFDTLLLLKDHQRLCSYLNENDLTDEVIIKEEKSIDFEDGAQTIDEEKIESTENQTTFNKQFEYNRRFFINWQDESVGSSSNENFGGPLLEIKDESLGPCENLDNVKNKNCHTCPVCQRTLRTRSSYYKHLMRHRKDKKFPCTTCKAIFCSKDALKEHMLTHKDFKLIFCDICNEQYDGIRKLLKHFQRHVSSSVHLTLDKFQNCSNDEWPCNMCAEKFTSIAELDKHTDGHSIDSYGNFVCGICEQTYSDGTTLKKHLSTHGIEPFACNICFLSFETCASLQKHTIAHQSQVSKTAFKCLLCKETFAKRVDLQTHIIIHASDEFACEQCGLSFGIEAAFKDHIRSHSMPHLCQECGTQFRTLGNLRSHMRRHIPDRPYVCNICNKGFKARTVLKHHKLRHENIKPYVCTICGYRCVQSGDLQVHMRFHTGDKPYVCTFPGCSKRFTISSHRAEHVRSHTGERKHICNICKKAFTEGRILKIHMLIHGNERPFKCDFCEKTFKRKDHKKVHMKQHMEKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511242;
- 90% Identity
- iTF_01511242;
- 80% Identity
- -