Vnig000540.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000001.1:15802838-15806093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.014 0.39 11.8 0.3 1 21 173 193 173 194 0.97 2 15 0.0011 0.032 15.3 3.6 1 23 290 312 290 312 0.98 3 15 0.00014 0.0038 18.1 1.7 1 23 318 340 318 340 0.98 4 15 1.5 42 5.4 0.5 3 23 348 368 347 368 0.97 5 15 0.018 0.49 11.5 0.1 2 23 389 410 388 410 0.93 6 15 0.00043 0.012 16.6 0.4 1 23 418 440 418 440 0.98 7 15 0.0045 0.12 13.4 0.8 1 23 445 467 445 467 0.95 8 15 0.00025 0.007 17.3 0.3 1 23 476 498 476 498 0.98 9 15 0.00078 0.022 15.8 0.0 1 23 503 525 503 525 0.97 10 15 1.1e-05 0.00029 21.7 2.6 3 23 531 551 529 551 0.96 11 15 0.0024 0.067 14.2 2.5 1 23 557 579 557 579 0.97 12 15 9.3e-06 0.00025 21.8 1.0 1 23 585 607 585 607 0.98 13 15 0.035 0.97 10.6 1.2 1 23 613 637 613 637 0.95 14 15 0.028 0.76 10.9 0.5 1 23 643 665 643 665 0.96 15 15 0.00026 0.0072 17.3 6.8 1 23 671 693 671 693 0.98
Sequence Information
- Coding Sequence
- ATGAATAACATCGAAAACATTGAACTGCCCGGcgagttaaataaaatttgcagAACGTGCATGTCGTTAAGCAATGAATTATATTCTGTTTTTGAAACAACTAATATACTgggtgaaaatataaaattaagccGTCTAATAATGTCGTGTGCCTCTGTACAGataaattctGACGAAAAGATGCCTTTATCAATGTGTGTAAACTGCATAAATCAATTAAGTAACGCGTATCGTTTTAAACTGCAGTGTGAAAAAAGTGATGCTGAtttacgaaaaattttaaaagagacACCGTCACCTTTTCAATTTGTAATGAAAcataaagataataataatagcagtTCCTTTCCTGTGCTAGATAATTATAGCGAAAACACTAGTCCAGAATTGCAATTGGCTGGCGTACGAGTGGCATGTAATCTGCCAGGCaaagttttttcgaaaaatatttcggtgaaaaatgaattttattgtgATATATGTAAAGACATGTTTAAATGTATACACTTGCATGTGTTTAAATGTGATAAATGCAGCAACATTTTTGATACTTTGGTTTTACTGAAAGATCATCAGAGACTGTGTAACTATTTGAatgaaaatgatttaataaacgACGATGCTATTATTAAAGAAGAGAAATCTATCGATTTCGAAGACGGTACTGGAGCAATTGAAGAGGAGAAAATTGAAAACGCAGAAAATCAAACGACGTTTAATAATAACCGTCGCTTTTTCATAAATTGGCAAGATGAATCTGTAGGAAGTAGTTCGAACGATAACTTTGACGGCACACTTTTGGAAATTGAAGATGAAATAAGTCTAGATCGgtgtgaaaatttaaataacgtaaaaagtaaaaattgtcATACGTGCCCAATTTGCCAAAGAACTTTGAGAACCAGATCAAGCTACTATAAACATGTGATGAAACATaggaaagataaaaaatatccatGCGTAACTTgcaaaacgattttttgttcgAAAGACGCGTTAAAAGAACATATGTCGACGCATAAAGATTTCAAATCGATATTATGTGACATCTGTAATGAACAGTACGACGGCATTAGGAAATTGTTGAAGCATTTTCAGCGACACGTTTCATCGTCGGTGCATCTTACTCTAGACAAATTTCAAAACTGCTCCAACGATGAGTGGCCTTGTAATATGTGCCCAGAGAAATTCACGTCTATTACAGAACTAGATAAACACACAGACGGACATAGCACTGATAATTACGGCAATTTTGTTTGCGGTATTTGTGAACAGACGTATTCGGACGGAACGACTCTAAAGAAACATTTGAGTACGCATGGCATTGAGCCATTTGCATgcaacatttgttttcttaGTTTTGAAACATGCGCAGGTTTACAAAAACACACAATCGCTCACCAATCTCAAGTATCCAAAACTGCATTCAAGTGTTTACTGTGTAAAGAAACTTTCGCAAAGCGTGTCGATTTGCAGACTCACATCATCATTCATGCGTCCGATGAGTTTGCatGTGAAGAGTGTGGTTTGTCGTTCGGTGTCGAAGCGGCATTCAAGGATCACATAAGAAGCCACTCGATGCCGCATTTGTGTCAGGAATGCGGCACACAGTTCCGCACGCTTGGAAACTTGCGTTCGCACATGCGCAGACACATTCCCGACAGACCATACGTGTGCAATATTTGCAATAAGGGTTTCAAAGCGAGAACAGTGCTCAAGCATCACAAACTGCGTCACGAAAACATTAAACCGTACGTCTGCACTATCTGCGGATACAGATGTGTGCAGTCGGGAGACTTGCAGGTGCATATGCGCTTCCATACAGgtGATAAGCCGTACGCTTGCACATTCCCTGGCTGCAGCAAACGATTCACCATTTCAAGTCACAGGGCCGAGCACGTTCGAAGTCATACGGGCGAGAGAAAGCACGTTTGCAACGTTTGTAAAAAAGCATTCACCGAAGGTAGAATATTGAAAATTCACATGCTGATACATGGAAATGAAAGACCtttcaaatgtgatttttgtgAAAAGACATTTAAACGTAAAGATCATAAAAAAGTTCACATGAAACAACATATGGAAAAAAAAGGTTAg
- Protein Sequence
- MNNIENIELPGELNKICRTCMSLSNELYSVFETTNILGENIKLSRLIMSCASVQINSDEKMPLSMCVNCINQLSNAYRFKLQCEKSDADLRKILKETPSPFQFVMKHKDNNNSSSFPVLDNYSENTSPELQLAGVRVACNLPGKVFSKNISVKNEFYCDICKDMFKCIHLHVFKCDKCSNIFDTLVLLKDHQRLCNYLNENDLINDDAIIKEEKSIDFEDGTGAIEEEKIENAENQTTFNNNRRFFINWQDESVGSSSNDNFDGTLLEIEDEISLDRCENLNNVKSKNCHTCPICQRTLRTRSSYYKHVMKHRKDKKYPCVTCKTIFCSKDALKEHMSTHKDFKSILCDICNEQYDGIRKLLKHFQRHVSSSVHLTLDKFQNCSNDEWPCNMCPEKFTSITELDKHTDGHSTDNYGNFVCGICEQTYSDGTTLKKHLSTHGIEPFACNICFLSFETCAGLQKHTIAHQSQVSKTAFKCLLCKETFAKRVDLQTHIIIHASDEFACEECGLSFGVEAAFKDHIRSHSMPHLCQECGTQFRTLGNLRSHMRRHIPDRPYVCNICNKGFKARTVLKHHKLRHENIKPYVCTICGYRCVQSGDLQVHMRFHTGDKPYACTFPGCSKRFTISSHRAEHVRSHTGERKHVCNVCKKAFTEGRILKIHMLIHGNERPFKCDFCEKTFKRKDHKKVHMKQHMEKKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530861;
- 90% Identity
- iTF_01530861;
- 80% Identity
- -