Xxan010019.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754468.1:35219396-35221404[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0002 0.0041 18.0 1.2 2 23 160 181 159 181 0.96 2 12 4.8e-05 0.00098 20.0 5.8 1 23 189 211 189 211 0.98 3 12 0.0009 0.018 16.0 0.1 1 23 217 239 217 239 0.98 4 12 0.0082 0.17 12.9 0.3 2 23 245 266 244 266 0.96 5 12 1.9e-05 0.00039 21.2 0.6 3 23 274 294 273 294 0.97 6 12 0.0061 0.13 13.3 3.9 1 23 300 323 300 323 0.96 7 12 0.89 18 6.5 1.4 2 21 332 348 331 351 0.77 8 12 3.2e-05 0.00065 20.5 0.1 1 23 357 380 357 380 0.97 9 12 0.001 0.02 15.8 1.3 3 23 390 410 389 410 0.99 10 12 6.1e-05 0.0012 19.6 0.2 1 23 416 438 416 438 0.99 11 12 0.0013 0.027 15.4 0.6 5 23 448 466 446 466 0.94 12 12 5.8e-05 0.0012 19.7 3.1 1 23 472 495 472 495 0.97
Sequence Information
- Coding Sequence
- ATGGAAAATCTTAAATTTtcggattttccaaaaatatgccgGACTTGTTTAATACAAAAAGAAGCAATGGAGCCTTTATATAAATGCCAAGTCCCAGAAATGTTATCGTCGTTTACAACCATAAAGGTCGAAATTGATGACGATTTACCGGTCCTTATATGTTCAGAATGTATAGCTCAAATAGTaaattgttacaattttaaaCAACAATGCGAAAACAGTGATCAAATATTGCAACAAATTCGAATACAAAAAACTACCACTTCTGATCAGAATGAATACACTTCGGAtacagaacaaaaaataaaagaacctATTAAAGACGAACAAACGAAAGAAACATCTGAAAAGGATAATACAGATAACGATGATGATTTTCAAAACGATTCTCAAAAAACGTCACCTAGTGACAACGAATCGTGCAAAGACAATGATTCAACCGAAGGCTACGATTTGTATACTAAAAGTGATAACTGTGCGTGTAAGATATGCGGCAAAGTTTTGGTAACGATCCATACTTTAGCTCGACACATGCAGATTCACAACAAAAATCGTAAATTTACACATCGGTGCACCGTTTGTCAGAAAGGTTTTTACGAAAAAGGACACCTCAATAAGCATATGCGGCGGCACGAAGGAGCTACTCGTTACAGTTGCGAAATATGCGGTAAGGAATTTTACGAACTAAGCGCCCAAGCTGTTCACATGGCGAAACACAATGTAAAACCGATGTCGTGTACAATTTGTGACAAGAGATTTTTAGTGAAACTTCAACTCGAAATTCACATGAAGGGCCACACGAAACAGCCGAGTAACATATGTTCGTATTGCGGCAAAAGATACATCACGCCGAGTAAACTCGAACGGCACAAATTGAGTCACGAGTCTACGCGGGCGTATGCGTGTAAATTTTGCGACAGTAAATTTAAGCATTCGTTTACGTTGAATCAACACGTACGTCAGATTCATCAGGGTATAAAACGAAAGAAAGATGTATGCACTATTTGCGGAAAATCCGTTGCCCATTTAAAGCATCACATATATGCAAAACACAGTAACCAACGTCCGTACAATTGTGAAGAATGCGGTGCAGGCTTCGTGTCCAATTCGCTTTTGAACACGCACGTGCGTTCGAAACATAAAGGCGAATCGTTGCTCAACGCGCTGTGCAATGTTTGCGGGAAACGATGTCAGACGCGAGCAGTTTTAGAAATTCACATGCGATCGCATACAAAAGAACGTCCGTTCAAATGCGAAACTTGCGGGAAAGCGTTCATGGCAGCGGGAGCACTAAAGACGCACACCAGATCACATACGGGCGAACGGCCGTACGGGTGTATTACTTGCGGTAAGGCCTTTTCGACCAGCACACTCCTTAAAATACACAACAGAATCCACACGGGTGAACGACCGTACGCCTGCAATGTTTGTGATAGAACGTTTCGACAGAAGTGCACTTTAGCTACACATCTAAAGAAGTTACATTAA
- Protein Sequence
- MENLKFSDFPKICRTCLIQKEAMEPLYKCQVPEMLSSFTTIKVEIDDDLPVLICSECIAQIVNCYNFKQQCENSDQILQQIRIQKTTTSDQNEYTSDTEQKIKEPIKDEQTKETSEKDNTDNDDDFQNDSQKTSPSDNESCKDNDSTEGYDLYTKSDNCACKICGKVLVTIHTLARHMQIHNKNRKFTHRCTVCQKGFYEKGHLNKHMRRHEGATRYSCEICGKEFYELSAQAVHMAKHNVKPMSCTICDKRFLVKLQLEIHMKGHTKQPSNICSYCGKRYITPSKLERHKLSHESTRAYACKFCDSKFKHSFTLNQHVRQIHQGIKRKKDVCTICGKSVAHLKHHIYAKHSNQRPYNCEECGAGFVSNSLLNTHVRSKHKGESLLNALCNVCGKRCQTRAVLEIHMRSHTKERPFKCETCGKAFMAAGALKTHTRSHTGERPYGCITCGKAFSTSTLLKIHNRIHTGERPYACNVCDRTFRQKCTLATHLKKLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511251;
- 90% Identity
- iTF_01511251;
- 80% Identity
- -