Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000011.1:3078151-3080073[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00015 0.0042 18.0 1.2 2 23 160 181 159 181 0.96

2 12 3.8e-05 0.0011 19.9 5.7 1 23 189 211 189 211 0.98

3 12 0.00069 0.019 16.0 0.1 1 23 217 239 217 239 0.98

4 12 0.0063 0.17 12.9 0.3 2 23 245 266 244 266 0.96

5 12 1.5e-05 0.0004 21.2 0.6 3 23 274 294 273 294 0.97

6 12 0.0047 0.13 13.3 3.9 1 23 300 323 300 323 0.96

7 12 0.68 19 6.5 1.4 2 21 332 348 331 351 0.77

8 12 2.4e-05 0.00067 20.5 0.1 1 23 357 380 357 380 0.97

9 12 0.00077 0.021 15.8 1.3 3 23 390 410 389 410 0.99

10 12 4.7e-05 0.0013 19.6 0.2 1 23 416 438 416 438 0.99

11 12 0.001 0.028 15.4 0.6 5 23 448 466 446 466 0.94

12 12 4.4e-05 0.0012 19.7 3.1 1 23 472 495 472 495 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00015	0.0042	18.0	1.2	2	23	160	181	159	181	0.96
2	12	3.8e-05	0.0011	19.9	5.7	1	23	189	211	189	211	0.98
3	12	0.00069	0.019	16.0	0.1	1	23	217	239	217	239	0.98
4	12	0.0063	0.17	12.9	0.3	2	23	245	266	244	266	0.96
5	12	1.5e-05	0.0004	21.2	0.6	3	23	274	294	273	294	0.97
6	12	0.0047	0.13	13.3	3.9	1	23	300	323	300	323	0.96
7	12	0.68	19	6.5	1.4	2	21	332	348	331	351	0.77
8	12	2.4e-05	0.00067	20.5	0.1	1	23	357	380	357	380	0.97
9	12	0.00077	0.021	15.8	1.3	3	23	390	410	389	410	0.99
10	12	4.7e-05	0.0013	19.6	0.2	1	23	416	438	416	438	0.99
11	12	0.001	0.028	15.4	0.6	5	23	448	466	446	466	0.94
12	12	4.4e-05	0.0012	19.7	3.1	1	23	472	495	472	495	0.97

Sequence Information

Coding Sequence: ATGGAAAATATTAAGTTTTcggattttccaaaaatatgccGGACTTGTTTAATGCAAAAAGAAGCAATGGAACCTTTATATAAATGCCAAGTCCCAGAAATGTTATCGTCGTTTACAACCATAAAGATTGAAATTGATGACGGTTTACCAGTCCTTATATGTTCAGAATGTATAGCTCAAATAGTAAATTGCTACAATTTTAAGCAACAATGCGAAAACAGTGATCAAATATTGCAAGaaattcgaatacaaaaaactGCCACTTCCAATCAGGACGAATATACTTCCGAtacagaacaaaaaataaaagaacctATCAAAACCGAAAAAACGAAAGAAACATCTGAAAAGGATAATACAGATAACGATGAGGATTTTCAAAACGATTCTCAAAAAACGTCACCTAGTGATAACGAATCATGCAAAGATAATGACTCAACGGAAGACTATGACTTGTATACTAAAAGTGATAACTGTGCTTGTAAGATCTGCGGTAAAGTTTTGGTAACGATCCATACTTTAGCTCGACACATGCAAATTCACAGCAAAAATCGGAAATTTACACATCGGTGTTCCGTTTGTCAGAAGGGGTTTTATGAAAAAGGACACCTCAATAAGCACATGCGACGTCACGAAGGTGCTACCCGTTACAGTTGCGAAATATGCGGTAAAGAATTTTACGAACTGAGCGCTCAAGCTGTTCACATGGCGAAACACAATGTAAAACCAATGTCGTGCACAATTTGTGACAAGCGATTTCTAGTGAAACTTCAACTCGAAATTCATATGAAAGGTCACACGAAACAGCCGAGTAATATATGTTCGTATTGCGGGAAACGATACATCACACCTAGTAAACTCGAACGGCACAAATTGAGTCACGAGTCGACTCGGGCGTATGCTTGCAAATTTTGCGATAGTAAATTTAAGCATTCGTTTACATTGAATCAACACGTAAGACAGATTCATCAGGGTATAAAACGAAAGAAAGACGTATGCACTATTTGCGGAAAATCTGTTGCCCACTTAAAGCATCACATCTATGCAAAACACAGTAACCAACGTCCGTATAATTGTGAAGAATGCGGTGCAGGCTTCGTGTCCAATTCGCTGTTAAACACGCACGTGCGTTCGAAACATAAAGGCGAATCGTTGCTCAACGCGTTATGCAATGTTTGCGGGAAACGATGTCAGACACGGGCAGTTTTAGAGATTCACATGCGATCGCATACAAAAGAGCGCCCTTTCAAATGCGAAACTTGCGGGAAAGCGTTCATGGCAGCGGGAGCGCTAAAGACGCACACCAGATCACATACCGGAGAAAGACCGTACGGGTGTATTACGTGCGGTAAAGCCTTTTCGACCAGTACGCTACTTAAAATACATAACAGAATCCACACGGGTGAACGGCCGTACGCCTGTAATGTTTGTGACAGAACGTTTCGACAGAAGTGTACTTTAGCCACACATCTAAAGAAGTtgcattaa
Protein Sequence: MENIKFSDFPKICRTCLMQKEAMEPLYKCQVPEMLSSFTTIKIEIDDGLPVLICSECIAQIVNCYNFKQQCENSDQILQEIRIQKTATSNQDEYTSDTEQKIKEPIKTEKTKETSEKDNTDNDEDFQNDSQKTSPSDNESCKDNDSTEDYDLYTKSDNCACKICGKVLVTIHTLARHMQIHSKNRKFTHRCSVCQKGFYEKGHLNKHMRRHEGATRYSCEICGKEFYELSAQAVHMAKHNVKPMSCTICDKRFLVKLQLEIHMKGHTKQPSNICSYCGKRYITPSKLERHKLSHESTRAYACKFCDSKFKHSFTLNQHVRQIHQGIKRKKDVCTICGKSVAHLKHHIYAKHSNQRPYNCEECGAGFVSNSLLNTHVRSKHKGESLLNALCNVCGKRCQTRAVLEIHMRSHTKERPFKCETCGKAFMAAGALKTHTRSHTGERPYGCITCGKAFSTSTLLKIHNRIHTGERPYACNVCDRTFRQKCTLATHLKKLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530839;
90% Identity: iTF_01530839;
80% Identity: -