Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: su(Hw)_1
Assembly: GCA_963575645.1
Location: OY754471.1:41569981-41581606[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00014 0.0028 18.5 2.5 1 23 145 168 145 168 0.98

2 12 2.1 43 5.4 2.0 2 23 176 198 175 198 0.89

3 12 0.0024 0.048 14.6 6.1 1 21 204 224 204 225 0.96

4 12 4e-08 8.2e-07 29.7 0.2 1 23 236 258 236 258 0.97

5 12 0.0013 0.028 15.4 4.3 1 23 268 290 268 290 0.99

6 12 1.5e-05 0.0003 21.6 0.1 1 23 296 318 296 318 0.98

7 12 3.4e-05 0.00069 20.4 0.5 1 23 324 346 324 346 0.99

8 12 0.00033 0.0068 17.3 3.6 1 23 352 374 352 374 0.96

9 12 0.00011 0.0022 18.8 1.4 1 23 380 403 380 403 0.94

10 12 0.00015 0.003 18.4 0.5 1 23 409 431 409 431 0.91

11 12 2.5e-06 5.2e-05 24.0 0.3 1 23 437 459 437 459 0.98

12 12 1.9e-06 3.9e-05 24.4 2.0 2 23 466 488 465 488 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00014	0.0028	18.5	2.5	1	23	145	168	145	168	0.98
2	12	2.1	43	5.4	2.0	2	23	176	198	175	198	0.89
3	12	0.0024	0.048	14.6	6.1	1	21	204	224	204	225	0.96
4	12	4e-08	8.2e-07	29.7	0.2	1	23	236	258	236	258	0.97
5	12	0.0013	0.028	15.4	4.3	1	23	268	290	268	290	0.99
6	12	1.5e-05	0.0003	21.6	0.1	1	23	296	318	296	318	0.98
7	12	3.4e-05	0.00069	20.4	0.5	1	23	324	346	324	346	0.99
8	12	0.00033	0.0068	17.3	3.6	1	23	352	374	352	374	0.96
9	12	0.00011	0.0022	18.8	1.4	1	23	380	403	380	403	0.94
10	12	0.00015	0.003	18.4	0.5	1	23	409	431	409	431	0.91
11	12	2.5e-06	5.2e-05	24.0	0.3	1	23	437	459	437	459	0.98
12	12	1.9e-06	3.9e-05	24.4	2.0	2	23	466	488	465	488	0.97

Sequence Information

Coding Sequence: ATGGATCACTTAAAAGAGGAATTAGTCGATAATGATGGCTTAGAGATCCCTGATATAGAAGAAAGTAAACCATTGCCAATTtcagaaaatgtttttgaagaTCAGGCGATTGTTTTGCAAACCGTAAAAATAGTAGAATGTTCAAAATGTGGACTTGGTTTTATGGAAGATCTTATACCGAGTCACGAAGAAAATTGCAACGGTCCTTTAGATATTCCACCACACGAAGCCGTAAGCTTTAACGTAACGGTCGAAGAAGTAGAAAACTTCGATGAAGACAATACGGAAAACGTAGCTTTGAACGATAATGAGGAAGTAGTGTCCGATCTTAATGCAGACCAAGAAGTGAGTCTTCTTACGATTAAAAACGAACCGGGAGCGCTGTGTTATTGCTGTGACGAAGTTATCGGAATAGCTCATAagACTGGCAAATTTAAATGCGAGGAGTGCAACTTCCAGTTCGTTCAAAAGGCGAGCCTGCACAGACACAAGCGCGTGGCTCACGGCTCTCCCGGTGCATCTTTACATTGCCCCGAATGCAGTGCACGATGCTATTCGGAATTAGAATTGAGACGGCACGTGTTCGAGCAGCACAAATCGTCCAAGCCGTACCACTGTCCGAGTTGTCACACGTCGTTCAGCCGTAAATACCATGTCGCCAGACATATGAAGCACTGCGGGTGCGACGGACGAGTCAAGCCGTCGTTTCCGTGTAATgtTTGCGGTAAAGTTTTTACGAGACAAGATAATTTACGGGAGCACTTAAGAGCTCATGCGGGCCAAGTAAAACGCACCAAGATATTTAAGTGTGAAACTTGTCAAAAAGAATTTCACGGACACAGCTTGCTCCAAATTCATGTTCGTACTCATACCGGAGAACGTCCATATCCGTGCGATATGTGTCCGAAAGCGTTTCCATCTAGTGGTGCAATGAAGAAGCATCGAAGAGTTCATACAGGTGAAAAGCCGTATAAATGTGACCAGTGCGAAGCACGGTTTGCAGCGAAAGAGACGCTGAATCGTCATATCCGAACTCACACCAACGACAAACCGCACGTGTGTCAGTTCTGCGGCCGACGTTTCATCCAAGCGACCCAGCTACGGGCGCACATGTTCCATCACACCGGAGAAAACGCGTTCAAGTGCGATTATTGCGGCAAGGCTTTCAATAGACGGACGCGTCTAGTTACTCACGTTCAGTTTCTGCACGAGGGAGCTAGGCCGTTCGAATGCCCCGAATGTCCCAAGCAGTTCTTCCGTAAAGAGGACCTGTCGCGACACAGTGTATTGCATTCCGGTGTGAAAGCGTACGCTTGTCCAACGTGCAATAAAAGTTTTGCGATGAAGTCGTCGCTGACCGTTCATTTGTTGACTCATCGCAGAGAGCCTCCGCAGAAATGCGACGAGTGCGGCCGCGCCTTCATCCGTCAGGACTGTCTGATACGTCACATGAGGTCTAAACATCGCGACATGCTCGAAGACATAGTTTGCAATGCGGAGAAACGTCGGCTGCAAGAACAGCTGCTGGCGGCTGCCGCGACGAAATCGTCCGACGTCACCAAGTCGATTGTGTGGACCGAACTGACTCTGACGGATTCGATCAAAGAACTGCTGAGTATACTCGTGGACGAATCGACGCTGAAGACGTTCGGTTGGCCCGATACGCCGGTCGACAAAGTTCTAGATTCTGTTATTATGAGGTGCGGTCACACGCCGGCCAGCAACCTGAAGTTCGATTACATCGATAGATTAAGAGAGAACGCGAAATTGCTATTTACGGCAGTCATCGATGATACGGCCGTTAAAACACTGTTGAATAATCAAACCGTCGATGAAGTTATTTTGCATGTTTTAAGACTCGCTAGAAatgaataa
Protein Sequence: MDHLKEELVDNDGLEIPDIEESKPLPISENVFEDQAIVLQTVKIVECSKCGLGFMEDLIPSHEENCNGPLDIPPHEAVSFNVTVEEVENFDEDNTENVALNDNEEVVSDLNADQEVSLLTIKNEPGALCYCCDEVIGIAHKTGKFKCEECNFQFVQKASLHRHKRVAHGSPGASLHCPECSARCYSELELRRHVFEQHKSSKPYHCPSCHTSFSRKYHVARHMKHCGCDGRVKPSFPCNVCGKVFTRQDNLREHLRAHAGQVKRTKIFKCETCQKEFHGHSLLQIHVRTHTGERPYPCDMCPKAFPSSGAMKKHRRVHTGEKPYKCDQCEARFAAKETLNRHIRTHTNDKPHVCQFCGRRFIQATQLRAHMFHHTGENAFKCDYCGKAFNRRTRLVTHVQFLHEGARPFECPECPKQFFRKEDLSRHSVLHSGVKAYACPTCNKSFAMKSSLTVHLLTHRREPPQKCDECGRAFIRQDCLIRHMRSKHRDMLEDIVCNAEKRRLQEQLLAAAATKSSDVTKSIVWTELTLTDSIKELLSILVDESTLKTFGWPDTPVDKVLDSVIMRCGHTPASNLKFDYIDRLRENAKLLFTAVIDDTAVKTLLNNQTVDEVILHVLRLARNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511140;
90% Identity: iTF_01511140;
80% Identity: -