Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: su(Hw)
Assembly: GCA_034508555.1
Location: JAVRKA010000008.1:7250232-7261785[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.0029 18.5 2.5 1 23 143 166 143 166 0.98

2 12 0.13 3.7 8.8 4.8 2 23 174 195 173 196 0.93

3 12 0.0043 0.12 13.5 4.9 1 21 202 222 202 223 0.96

4 12 3e-08 8.4e-07 29.7 0.2 1 23 234 256 234 256 0.97

5 12 0.0011 0.03 15.4 4.4 1 23 266 288 266 288 0.99

6 12 1.7e-05 0.00047 21.0 0.1 1 23 294 316 294 316 0.98

7 12 2.6e-05 0.00071 20.4 0.5 1 23 322 344 322 344 0.99

8 12 0.00025 0.007 17.3 3.6 1 23 350 372 350 372 0.96

9 12 8.3e-05 0.0023 18.8 1.4 1 23 378 401 378 401 0.94

10 12 0.00011 0.0031 18.4 0.5 1 23 407 429 407 429 0.91

11 12 2.5e-06 7e-05 23.6 0.4 1 23 435 457 435 457 0.97

12 12 1.5e-06 4e-05 24.4 2.0 2 23 464 486 463 486 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.0029	18.5	2.5	1	23	143	166	143	166	0.98
2	12	0.13	3.7	8.8	4.8	2	23	174	195	173	196	0.93
3	12	0.0043	0.12	13.5	4.9	1	21	202	222	202	223	0.96
4	12	3e-08	8.4e-07	29.7	0.2	1	23	234	256	234	256	0.97
5	12	0.0011	0.03	15.4	4.4	1	23	266	288	266	288	0.99
6	12	1.7e-05	0.00047	21.0	0.1	1	23	294	316	294	316	0.98
7	12	2.6e-05	0.00071	20.4	0.5	1	23	322	344	322	344	0.99
8	12	0.00025	0.007	17.3	3.6	1	23	350	372	350	372	0.96
9	12	8.3e-05	0.0023	18.8	1.4	1	23	378	401	378	401	0.94
10	12	0.00011	0.0031	18.4	0.5	1	23	407	429	407	429	0.91
11	12	2.5e-06	7e-05	23.6	0.4	1	23	435	457	435	457	0.97
12	12	1.5e-06	4e-05	24.4	2.0	2	23	464	486	463	486	0.97

Sequence Information

Coding Sequence: ATGGATTCGTTAAAAGAGGAATTAGTCGATAATGAAGGCTTAGAAATCCATGATATAGAAGAAAGTAAATCAATTCCCGAAAATGTTTTCGGAGATCAGCCGATAGTTTTGCAAACCGTAAAAATCGTCGAATGTTCCAAATGCGGACTTGGATTTATGGAAGATCTTGTAGCAAGTCATGAGGAGAGTTGCAGCGGTCCATCGGATATTCCAGCATCCGGGGCCGTGAGCTTTAACGTAACAGTCGAAGAAGTTGAGAACTTCGATGAAGATAATACAGAAAATGTAGCTCTGAACGATAATGAGGAAGCCGATGCCGATTTTAATGCTGATCAGGAAGTGAGTCAGCTTACGATCAAAGACGAGCCGGGAGCACTGTGTTTTTGCTGTGACGAAGTGATCGGAATAGCTCATaagGCCGGCAGATTTAAATGCGAGGAGTGCAACTTTCAGTTCGTTCAAAAGGCGAGCCTTCACAGACACAAACGCGTAGCTCATGGCTCTCCCGGTGCTGCTTTACATTGTCCAGAATGCAGTGCGAGATGCTATTCGGAAACAGAATTAAGACGGCATATGTTCGAACATCATAAATCGTCCAAGCCGTATCACTGTTCGAGTTGTCACACGGCGTTCAGTCGTAAATACCACGTCGCCAGACATATGAAATACTGCGGGTGCGACGGACGAGTCAAGCCGTCGTTTCCGTGCAATGTTTGTGGTAAAGTTTTTACGAGACAAGATAATTTACGGGAACACTTAAGAGCTCACGCAGGTCAAGTAAAACGCACTAAGATATTTAAGTGTGACACCTGTCAAAAAGAATTCCACGGACACAGTTTGCTTCAAATTCATGTTCGTACTCATACCGGAGAACGTCCATATCCGTGTGATCTGTGTCCAAAAGCGTTTCCATCTAGTGGCGCGATGAAGAAACATCGAAGAGTTCATACAGGTGAAAAGCCTTATAAATGTGACCAGTGCGAGGCACGGTTTGCAGCGAAAGAAACGCTGAATCGTCATATCCGAACTCACACGAACGACAAGCCGCACGTTTGTCAGTTCTGTGGCCGCCGTTTCATTCAAGCGACTCAACTCCGGGCTCACATGTTCCATCATACCGGAGAAAACGCTTTCAAGTGCGATTATTGCGGCAAAGCTTTTAATAGGCGAACGCGCCTCGTCACCCACGTCCAGTTTCTGCACGAGGGAGCTACGCCGTTCGAATGCCCTGAATGTCCCAAGCAGTTCTTCCGTAAAGAAGACCTGTCGCGACATAGTGTATTGCATTCCGGTGTTAAAGCGTTCGCTTGTCCAACATGTAATAAAAGTTTTGCGATGAAGTCATCACTGACCGTTCATTTATTGACTCATCGCCGAGAGCCTCCTCAGAAATGTGACGAGTGCGGCCGCGCTTTTATCCGTCAGGACTGCCTGATACGTCACATGAGGTCGAAACATCGCGATATGCTCGAGGACATAGTTTGCAATGCGGAGAAACGTCGATTGCAAGAACAGTTGCTCGCGGCTGCCGCAACGAAATCGTCTAACGTCACCAATTCGATTGTGTGGACCGAACTGACTTTGACAGATTCGATCAAAGAACTGCTTAGTATACTCGTAGATGAGTCGACGTTGAAAACATTCGGGTGGCCGGATACGCCGGTCGATAAGGTTCTCGATTCGGTTATTATGAGGTGCGGCCATACGCCGGCCAGCAACCTCAAGTTTGATTACATCGACAGATTAAGAGAGAATGCCAAATTGCTCTTTACGGCTGTCATCGATGATACGGCTGTTAAAACACTGTTAAATAATCAAACTGTCGATGAAGTTATTTTGCATGTTTTAAGACTCGCTAGAAGtgaataa
Protein Sequence: MDSLKEELVDNEGLEIHDIEESKSIPENVFGDQPIVLQTVKIVECSKCGLGFMEDLVASHEESCSGPSDIPASGAVSFNVTVEEVENFDEDNTENVALNDNEEADADFNADQEVSQLTIKDEPGALCFCCDEVIGIAHKAGRFKCEECNFQFVQKASLHRHKRVAHGSPGAALHCPECSARCYSETELRRHMFEHHKSSKPYHCSSCHTAFSRKYHVARHMKYCGCDGRVKPSFPCNVCGKVFTRQDNLREHLRAHAGQVKRTKIFKCDTCQKEFHGHSLLQIHVRTHTGERPYPCDLCPKAFPSSGAMKKHRRVHTGEKPYKCDQCEARFAAKETLNRHIRTHTNDKPHVCQFCGRRFIQATQLRAHMFHHTGENAFKCDYCGKAFNRRTRLVTHVQFLHEGATPFECPECPKQFFRKEDLSRHSVLHSGVKAFACPTCNKSFAMKSSLTVHLLTHRREPPQKCDECGRAFIRQDCLIRHMRSKHRDMLEDIVCNAEKRRLQEQLLAAAATKSSNVTNSIVWTELTLTDSIKELLSILVDESTLKTFGWPDTPVDKVLDSVIMRCGHTPASNLKFDYIDRLRENAKLLFTAVIDDTAVKTLLNNQTVDEVILHVLRLARSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530705;
90% Identity: iTF_01530705;
80% Identity: -