Xxan014938.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- Znf516
- Assembly
- GCA_963575645.1
- Location
- OY754471.1:41747258-41753185[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0026 0.053 14.5 3.8 2 23 171 193 170 193 0.97 2 18 1.6 33 5.7 3.7 2 23 199 221 198 221 0.93 3 18 6e-05 0.0012 19.6 1.9 3 23 242 262 241 262 0.97 4 18 7.2e-05 0.0015 19.4 0.2 1 23 268 291 268 291 0.96 5 18 0.094 1.9 9.6 1.0 3 23 343 363 341 363 0.95 6 18 0.0052 0.11 13.6 2.4 1 23 369 392 369 392 0.98 7 18 0.04 0.82 10.8 0.3 2 23 461 482 460 482 0.97 8 18 0.0001 0.0021 18.9 0.4 1 23 488 511 488 511 0.96 9 18 0.4 8.2 7.6 0.9 2 23 557 578 556 578 0.97 10 18 3.1e-06 6.3e-05 23.7 1.2 1 23 584 606 584 606 0.99 11 18 0.01 0.21 12.6 1.5 1 23 612 634 612 634 0.93 12 18 0.18 3.7 8.7 3.8 1 23 640 662 640 662 0.95 13 18 0.00015 0.003 18.4 2.8 3 23 670 690 668 690 0.96 14 18 5.6e-06 0.00011 22.9 0.2 1 20 696 715 696 718 0.94 15 18 0.00014 0.003 18.5 3.8 1 21 724 744 724 746 0.95 16 18 6e-05 0.0012 19.6 1.1 1 23 752 774 752 774 0.94 17 18 8.2e-07 1.7e-05 25.5 0.8 1 23 780 802 780 802 0.98 18 18 8.4e-06 0.00017 22.3 3.9 1 23 808 830 808 830 0.98
Sequence Information
- Coding Sequence
- ATGTCTAAGTTACCTGATTTTTCTACAACTTGCCGAAcgtgtttaaaagaaagttgCAAAACCGTCGTTTCGGTGTTCGATGCGAATTACTTGGATTCTGACAAACATAAACTGTCAGAAATATTATTGGAATGCGCTTCTTTAAAGATTTCATCGAACGATAAACTTCCAAAAGTAATGTGTACGGATTGTGCAACGACAGTTAAAAACTGTTATCGATTTAAACAATTATGCCATCAATCGGAACTAGCcttattagaattaataaataaatacgaaatctCACAGTCGAATGCAATAATCGGTATAAAATCTGAGAATTTGGACACAGATGTAGACAGTTCGGATCTTCTGATTAAAGAGGAGGCAGACAACGCGTCCGTAAGTGACTACGTTTACATCGGTGAAAATGTTGAGGTTAAATTAGACAATGAATTTAATAGTTCCGATGACGAGCCATTATCCCTTAGGGCGGGCGGAAAAACACAAATTAAATTCAGGGACGATTTACAATGTAatatttgtaacaaattttaCAGAACAAAATATACTTTAGCCTGTCATATTCGTACACAACATTCcgaccaaaaaataaaatgtgaacatTGTGCCGAATCGTTCTCGTGCCTTTACGATTTAGAGAAACATAATAAACAAACGCACGGAATGAAAATCAAATTCAGAAGAAAGAAACGCTCTCATATAGTAGGCGAGAAaccttattgttttatttgtgataaatattttacatcGAGATACAATCTCGATTCGCATATGAAAAGGCACATCGGCGATAAGAATTTTAAATGCGGCGTTTGCGAGAAAGGGTTCATAACAAAATGGGATCTGATTCGTCATAAAAGAGGAGTTCACGGTACGGACCTCGACGATAAAGACGTCGAACCTCAAACCGATAGCGAAGTGTTCATAGAAAATCCAAACGATATCGATATACAAACAAATATGAAATCGCCgctcgaatttttgaaaaatttgacgcgtttagatttcaaaaacggcgttaactgtacattttgtaaaaagcttttttatgtGAGATCCGATTTAGAAATGCATTTCATAAGGCATTtgacaataaaaacatttaaatgtgATCTTTGTAGCGAAACGTTTTCTGGATTTTTTGAACTGACGCAACACAGGAAGAAAACGCACAGAAAAAGAGACTGTTCCGAATTAAACGACACGGAAATGAATAACGGAACTGAAAATTCCGATAATGTTGTTAGTGAGTTTGGCGGAcgtgaagttttaaaattaagcgaCTTAATAAAATCCGAGGTCATCGAAAACGAGGACTTACATCCGGATTTGGAATATGTCAAAAAGATTCCaagaatacaatttaaaaagggCGTTAAGTGCGATCGATGCCCTCGGGTACTTTACAAAAGATCCGATATGGAAATACATATTAGTCGACACTTAGGAATAAAGAGTTTTCCGTGTCAAATTTGTTCCAAGTCGTTTGTAGTCATCTCCGACTTGACGAGACATAGAAAAAATGTACATTCCGATTTGTTGAACGAAGATATCGGCGATGAAGATTATGTCGGCTTAGAGAATCGGGACGAAAACGATACCGatgttaaagaagaaaaaaccgaTTTGACTTTACCGAGTagcaaatttacaaaatatcccATCGAATGCAAAGTGTGCTTGCGaacgttttggaaaaagtccAATTACGATTTACACGTTAAACGACATCTGGGAGTAAGGAAATTTAAATGCGAAGTGTGTCCGAAGAAATTCATTGCGCGATACGATCTGAAAAGACACTTGAGAACCCACGGGAAGTTGACGGGCTTTCACTGCAGGCATTGTTACAAGAGTTTCGATGGCAGTGATGAATTGGAAGCTCACGCTGCCGAACACGAAAACGATACTCCGCATATCTGTCAAGAATGCGGAAAACAGTTTTTGAGAAGGAGAAGTTTGTGCCTTCACAAGGCTgttCATACGGGCGAGAGGCCCCATTTATGTACAGTCTGCGGACGAGCTTTTGCTCTTTCGTGTAATTTGAAAACTCATATGCGAATTCACAACGGTGAGAAGCCGTATACGTGCAAAGTGTGCGGCAAAGCGTTTACGCAGTGGGGGTCTCTGCGAAGTCATTTGCCCGTTCATTCGGACGAGAAACGGTTTGTCTGTCAGACTTGCGGCAAGGCGTTCAGACGACAAAATACATTGAGATCTCATCTGAGATGCCACACTGGTGTACGCAATTTTCCTTGTTCGATGTGCGACAAGCGATTTTATGATAGCAGCATGCTGAGGAAACATTTTGTTGTTCATACAGgaGAGAAGAATTTCAAATGTGATATTTGCAACAAAGCTTTTAACCGATCGAGCACGTTGCGCGTTCACGTTAAAATTCACAGCGGCGAACGGCCGTTTGTCTGTACGGTGTGCGGACGAAGTTTTATACAAAAACATTGTCTTATTAGTCATATGAATACGCATCAATAA
- Protein Sequence
- MSKLPDFSTTCRTCLKESCKTVVSVFDANYLDSDKHKLSEILLECASLKISSNDKLPKVMCTDCATTVKNCYRFKQLCHQSELALLELINKYEISQSNAIIGIKSENLDTDVDSSDLLIKEEADNASVSDYVYIGENVEVKLDNEFNSSDDEPLSLRAGGKTQIKFRDDLQCNICNKFYRTKYTLACHIRTQHSDQKIKCEHCAESFSCLYDLEKHNKQTHGMKIKFRRKKRSHIVGEKPYCFICDKYFTSRYNLDSHMKRHIGDKNFKCGVCEKGFITKWDLIRHKRGVHGTDLDDKDVEPQTDSEVFIENPNDIDIQTNMKSPLEFLKNLTRLDFKNGVNCTFCKKLFYVRSDLEMHFIRHLTIKTFKCDLCSETFSGFFELTQHRKKTHRKRDCSELNDTEMNNGTENSDNVVSEFGGREVLKLSDLIKSEVIENEDLHPDLEYVKKIPRIQFKKGVKCDRCPRVLYKRSDMEIHISRHLGIKSFPCQICSKSFVVISDLTRHRKNVHSDLLNEDIGDEDYVGLENRDENDTDVKEEKTDLTLPSSKFTKYPIECKVCLRTFWKKSNYDLHVKRHLGVRKFKCEVCPKKFIARYDLKRHLRTHGKLTGFHCRHCYKSFDGSDELEAHAAEHENDTPHICQECGKQFLRRRSLCLHKAVHTGERPHLCTVCGRAFALSCNLKTHMRIHNGEKPYTCKVCGKAFTQWGSLRSHLPVHSDEKRFVCQTCGKAFRRQNTLRSHLRCHTGVRNFPCSMCDKRFYDSSMLRKHFVVHTGEKNFKCDICNKAFNRSSTLRVHVKIHSGERPFVCTVCGRSFIQKHCLISHMNTHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511082;
- 90% Identity
- iTF_01511082;
- 80% Identity
- -