Vnig013282.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- Znf516
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000039.1:38342-41948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.002 0.054 14.5 3.8 2 23 171 193 170 193 0.97 2 18 1.2 34 5.7 3.7 2 23 199 221 198 221 0.93 3 18 4.6e-05 0.0013 19.7 1.9 3 23 242 262 241 262 0.97 4 18 5.5e-05 0.0015 19.4 0.2 1 23 268 291 268 291 0.96 5 18 0.071 2 9.6 1.0 3 23 339 359 337 359 0.95 6 18 0.0039 0.11 13.6 2.4 1 23 365 388 365 388 0.98 7 18 0.03 0.84 10.8 0.3 2 23 457 478 456 478 0.97 8 18 7.7e-05 0.0021 19.0 0.4 1 23 484 507 484 507 0.96 9 18 0.3 8.3 7.6 0.9 2 23 552 573 551 573 0.97 10 18 2.3e-06 6.4e-05 23.7 1.2 1 23 579 601 579 601 0.99 11 18 0.0038 0.1 13.6 1.7 1 23 607 629 607 629 0.91 12 18 0.14 3.8 8.7 3.8 1 23 635 657 635 657 0.95 13 18 0.00011 0.0031 18.4 2.8 3 23 665 685 663 685 0.96 14 18 4.3e-06 0.00012 22.9 0.2 1 20 691 710 691 713 0.94 15 18 0.00011 0.003 18.5 3.8 1 21 719 739 719 741 0.95 16 18 4.6e-05 0.0013 19.7 1.1 1 23 747 769 747 769 0.94 17 18 6.3e-07 1.7e-05 25.5 0.8 1 23 775 797 775 797 0.98 18 18 6.4e-06 0.00018 22.3 3.9 1 23 803 825 803 825 0.98
Sequence Information
- Coding Sequence
- ATGTCTAAGTTACCTGATTTTTCTACAACTTGTCGAACTTGTTTAAAAGAAAGTTGTACCGCTGTTGTGTCAGTGTTCGATGCGAATTACTTAGATTCCGATAAACATAaactgtcagaaatattattagaaTGTGCTTCTTTAAAGATTTCATCGAATGATAAACTTCCAAAAGTAATGTGTACAGATTGCGCAACGACAGTTAAAAACTGTTATCGATTTAAACAATTATGCCATAAATCAGAACTAGCCTTATTagaattaataaagaaatacgAAATCTCACAGTCCAATGCAATACTTGCTATAAAGTCTGAGACTTTGGATACAGATCTAGACAGTTCTGATCTCCTGATTAAAGAAGAGGCAGACAACGCGTCTGTAAGTGACTACGTTTACATCGGTGAAAATGTCGAAGTGAAATTAGATAACGAATTTAATAGTTCTGATGACGAGCCATTATCGCTTAGGGCAGGCGGGAAAACACAAATCAAATTCAGGGACGATTTACAATGTAATATTTGTAACAAATTTTACAGAACTAAATACACTTTAGCCTGCCATATTCGTACGCAACATTccgaccaaaaaataaaatgtgaacATTGTGCCGAATCATTTTCATGTCTTTACGATTTAGAGAAACACAATAAACAAACGCATGGAATGAAAATCAAATTCAGAAGAAAGAAACGTTCTCATATAGTAGGTGAAAAACCTTACTGTTTTAtttgtgataaatattttacatcaaGATATAATCTCGATTCTCATATGAAAAGGCACATTGGCGATAAGAATTTTAAATGCGGCGTGTGTGAAAAAGGATTCATAACAAAATGGGATTTGATTCGTCATAAAAGGGGAGTTCACGGTACGGACCTCGATGACAAAGACGTTGAACCTCAAACCGATAGCGAAGTATTTGTAGAAAATCCAAACGATATCGATATGAAATCACCGCTCGAGTTTTTGAAGAATTTAACGCGTTTAGATTTCAAAAATGGCGTGAattgtacattttgtaaaaagttattttatgtgAGATCTGATTTAGAAATGCATTTCATAAGGCACTTGACAATAAAAACGTTTAAATGTGATCTTTGTAGCGAGACATTTTCTGGGTTTTTCGAACTGACGCAACACAGGAAAAAAACGCACAGAAAAAGAAACTGTTCCGAATTAAACGGCACGGATATGAATAATGGAGGTGAAAATTCTGATAATGCAGTTAGCGAGTTTGGCGGAcgtgaagttttaaaattaagcgATTTAATCAAATCCGAGGCGATCGACAATGAAGACTTACATCCGGATTTggaatatgtcaaaaaaattccaagaatacaatttaaaaaaggcGTAAAGTGTGATCGATGTCCTAGAGTTCTTTACAAAAGATCCGATATGGAAATACATATTAGTCGACATTTAGGAATAAAGAGTTTTCCGTGTCAAATTTGTTCGAAGTCATTTGTAGTCATCTCCGACTTAACCAGACATAGAAAAAATGTTCATTCTGATTTATTGAATGACGATATTGGGGATGAAAATTATGTCACTTTAGAGAATCAGGACGTAACCGATGAacttaaagaagaaaaaactgaTTTGAGTTTACCGAGTagcaaatttacaaaatatccgATCGAATGCAAGGTGTGCTTGCGAACGTTTTGGAAAAAGTCCAATTACGATTTACACGTTAAACGGCATCTAGGAGTAAGGAAATTTAAATGCGAAGTGTGTCCAAAGAAATTTATTGCGCGATACGATTTGAAAAGGCACTTAAGAACCCACGGGAAGTTAACGGGCTTTCATTGCAAACACTGTTACAAGAGTTTCGAAGGCAGCGATGAATTAGAAGCTCACGCTGTCGAGCACGAAAACGATGCTCCGCACATCTGTCAAGAATGCGGAAAACAGTTTTTAAGGAGAAGAAGTTTGTGCCTTCACAAGGCTgttCATACAGGCGAAAGGCCTCATTTATGTACAGTCTGCGGACGAGCTTTTGCTCTTTCGTGTAATTTAAAAACTCATATGCGAATCCACAATGGTGAAAAGCCGTATACTTGTAAAGTGTGCGGTAAAGCGTTTACGCAGTGGGGATCTCTGCGAAGTCATTTGCCAGTTCATTCGGACGAGAAACGGTTTGTTTGTCAGACTTGTGGCAAGGCGTTCAGACGACAAAATACGCTGAGGTCTCACCTGAGGTGCCACACCGGTGTTCGCAATTTTCCTTGTTCAATGTGCGACAAGCGATTTTACGATAGCAGCATGTTGAGAAAACATTTTGTTGTTCATACAGgggagaaaaatttcaaatgtgaTATTTGCAACAAAGCATTCAACCGATCAAGTACGCTGCGCGTTCATGTTAAAATTCATAGCGGCGAACGGCCGTTTGTCTGTACGGTGTGCGGCCGaagttttatacaaaaacattGTCTCATTAGTCATATGAATACGCATCAATAA
- Protein Sequence
- MSKLPDFSTTCRTCLKESCTAVVSVFDANYLDSDKHKLSEILLECASLKISSNDKLPKVMCTDCATTVKNCYRFKQLCHKSELALLELIKKYEISQSNAILAIKSETLDTDLDSSDLLIKEEADNASVSDYVYIGENVEVKLDNEFNSSDDEPLSLRAGGKTQIKFRDDLQCNICNKFYRTKYTLACHIRTQHSDQKIKCEHCAESFSCLYDLEKHNKQTHGMKIKFRRKKRSHIVGEKPYCFICDKYFTSRYNLDSHMKRHIGDKNFKCGVCEKGFITKWDLIRHKRGVHGTDLDDKDVEPQTDSEVFVENPNDIDMKSPLEFLKNLTRLDFKNGVNCTFCKKLFYVRSDLEMHFIRHLTIKTFKCDLCSETFSGFFELTQHRKKTHRKRNCSELNGTDMNNGGENSDNAVSEFGGREVLKLSDLIKSEAIDNEDLHPDLEYVKKIPRIQFKKGVKCDRCPRVLYKRSDMEIHISRHLGIKSFPCQICSKSFVVISDLTRHRKNVHSDLLNDDIGDENYVTLENQDVTDELKEEKTDLSLPSSKFTKYPIECKVCLRTFWKKSNYDLHVKRHLGVRKFKCEVCPKKFIARYDLKRHLRTHGKLTGFHCKHCYKSFEGSDELEAHAVEHENDAPHICQECGKQFLRRRSLCLHKAVHTGERPHLCTVCGRAFALSCNLKTHMRIHNGEKPYTCKVCGKAFTQWGSLRSHLPVHSDEKRFVCQTCGKAFRRQNTLRSHLRCHTGVRNFPCSMCDKRFYDSSMLRKHFVVHTGEKNFKCDICNKAFNRSSTLRVHVKIHSGERPFVCTVCGRSFIQKHCLISHMNTHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530597;
- 90% Identity
- iTF_01530597;
- 80% Identity
- -