Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: PRDM5
Assembly: GCA_963575645.1
Location: OY754465.1:59249949-59259103[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 2.6e-05 0.00053 20.8 1.1 2 23 224 246 224 246 0.95

2 27 0.082 1.7 9.8 0.1 1 21 363 383 363 386 0.88

3 27 7.2 1.5e+02 3.7 2.1 2 23 471 492 470 492 0.84

4 27 6.1 1.3e+02 3.9 0.1 1 20 499 518 499 520 0.94

5 27 0.17 3.5 8.8 0.2 1 23 548 571 548 571 0.94

6 27 0.24 5 8.3 0.1 2 21 583 602 582 603 0.93

7 27 2.5e-05 0.00051 20.8 0.7 2 23 681 702 680 702 0.97

8 27 0.32 6.5 7.9 0.9 1 23 709 732 709 732 0.90

9 27 0.81 17 6.7 0.1 1 23 744 766 744 766 0.95

10 27 2.1e-05 0.00044 21.1 2.8 1 23 770 792 770 792 0.98

11 27 0.0028 0.058 14.4 0.1 1 23 799 821 799 821 0.98

12 27 0.22 4.6 8.4 0.2 1 23 838 860 838 860 0.98

13 27 0.35 7.1 7.8 0.3 2 23 875 896 874 896 0.97

14 27 0.18 3.6 8.7 2.5 1 23 906 929 906 929 0.98

15 27 0.0041 0.085 13.9 1.1 1 23 968 990 968 990 0.96

16 27 0.0037 0.075 14.0 1.3 1 23 1012 1034 1012 1034 0.96

17 27 0.00067 0.014 16.4 0.7 1 23 1056 1078 1056 1078 0.95

18 27 0.0006 0.012 16.5 0.4 1 23 1095 1117 1095 1117 0.97

19 27 0.034 0.69 11.0 0.3 1 23 1124 1146 1124 1146 0.96

20 27 0.0038 0.077 14.0 0.6 1 23 1167 1189 1167 1189 0.97

21 27 0.0049 0.1 13.7 0.0 1 23 1206 1228 1206 1228 0.92

22 27 6 1.2e+02 3.9 7.5 2 23 1235 1257 1234 1257 0.96

23 27 0.45 9.1 7.5 0.4 3 23 1274 1294 1273 1294 0.95

24 27 0.00058 0.012 16.6 1.9 2 23 1305 1327 1304 1327 0.94

25 27 0.00024 0.005 17.7 0.3 1 23 1363 1385 1363 1385 0.99

26 27 0.0035 0.071 14.1 0.7 1 23 1417 1440 1417 1440 0.96

27 27 0.042 0.86 10.7 1.7 1 23 1447 1470 1447 1470 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	2.6e-05	0.00053	20.8	1.1	2	23	224	246	224	246	0.95
2	27	0.082	1.7	9.8	0.1	1	21	363	383	363	386	0.88
3	27	7.2	1.5e+02	3.7	2.1	2	23	471	492	470	492	0.84
4	27	6.1	1.3e+02	3.9	0.1	1	20	499	518	499	520	0.94
5	27	0.17	3.5	8.8	0.2	1	23	548	571	548	571	0.94
6	27	0.24	5	8.3	0.1	2	21	583	602	582	603	0.93
7	27	2.5e-05	0.00051	20.8	0.7	2	23	681	702	680	702	0.97
8	27	0.32	6.5	7.9	0.9	1	23	709	732	709	732	0.90
9	27	0.81	17	6.7	0.1	1	23	744	766	744	766	0.95
10	27	2.1e-05	0.00044	21.1	2.8	1	23	770	792	770	792	0.98
11	27	0.0028	0.058	14.4	0.1	1	23	799	821	799	821	0.98
12	27	0.22	4.6	8.4	0.2	1	23	838	860	838	860	0.98
13	27	0.35	7.1	7.8	0.3	2	23	875	896	874	896	0.97
14	27	0.18	3.6	8.7	2.5	1	23	906	929	906	929	0.98
15	27	0.0041	0.085	13.9	1.1	1	23	968	990	968	990	0.96
16	27	0.0037	0.075	14.0	1.3	1	23	1012	1034	1012	1034	0.96
17	27	0.00067	0.014	16.4	0.7	1	23	1056	1078	1056	1078	0.95
18	27	0.0006	0.012	16.5	0.4	1	23	1095	1117	1095	1117	0.97
19	27	0.034	0.69	11.0	0.3	1	23	1124	1146	1124	1146	0.96
20	27	0.0038	0.077	14.0	0.6	1	23	1167	1189	1167	1189	0.97
21	27	0.0049	0.1	13.7	0.0	1	23	1206	1228	1206	1228	0.92
22	27	6	1.2e+02	3.9	7.5	2	23	1235	1257	1234	1257	0.96
23	27	0.45	9.1	7.5	0.4	3	23	1274	1294	1273	1294	0.95
24	27	0.00058	0.012	16.6	1.9	2	23	1305	1327	1304	1327	0.94
25	27	0.00024	0.005	17.7	0.3	1	23	1363	1385	1363	1385	0.99
26	27	0.0035	0.071	14.1	0.7	1	23	1417	1440	1417	1440	0.96
27	27	0.042	0.86	10.7	1.7	1	23	1447	1470	1447	1470	0.96

Sequence Information

Coding Sequence: ATGGAGGTGTCTCGAACGAGATATCTCGCTTCTTGTAGACTGTGTCTTAAAGATGATGCATGTACTGTTCCTATTTTTGGTGATGGAGATAATTTGGcgcaaaaaatattgtcatgCGTTTCAGTTCagGTGTTTAAAACTGATCTATTTCCGACAATCGTGTGCGAATTTTGTATGGAGAGAATTGATTCTTGGTACAATTTTAAGAAGATTTGTGATGATTCCCAAGCAAAGCTACGAGAATGGCTGAACACGATGTACCACGGCAATGTCCAGAACACTagCTTTATTGTGAAAGAAGAACCTACAGACTGTGACTTCAACTACGATTTTTCTATAGAAGATGATATCATAGAAACGGATATAACGGTGAAATCAGAACTGGATTGTGGAATGGGTGAACTCCACACGACTAATATTAATGAAGACGCCAGATCGACAACGTCCAccaatgtaaatattatatttgaaaatgaaaatggcACTTCTCCCGTATCCACCAACTATACAATGGACGAAAACGATATTATCAGTGACATTCATAGTGAAACAAATGCTAGTGTATCGTGTAGTGACATAACAGCTCGAGACAGCAGTAGTTTTGCCGACGCATTTCAACAAAAGACCAAGAAAAGGAAAAGATATCTGAAAGGAAAAAAACCACTTCCGAAATGCGACGACTGCGGTAAGAGGTTCGCCAACAAACAGAATTTGCTTCGACATAAAGTCACTCTTCACGGTTTAGTACCGGTTAATAATCGAACTATGAATCCTCACAACAACCAACTGTCTTCTCCCAAGGAGGTCGAGAATAGAACGGAACTCGACACCAACGAATCGAATACAATGTCGTCGGTGAATTCTGCGGAAAAAGAAAATACCAACGATCTGCAGGACGATCAGACAGAAAGAATTCCGCAAATTACGCAGGTGGAAAGTATACGGCTGAGTCCGGACGTTCCTGATTTCCGAGGATTTGAATGTGAAAACAATTTACAGTCAAACGTTTCCCCGACGCAAGAATTCGATCAGGGCGAAGAAAATCTTCAAGTGGATAATAGtgtttctgaagaaaattcggATCTGTTCGCTTGTAAAATTTGTCTGAAACCGTTCTCGAACGTCGCCAATGCAAGAAGACACGAAGTGAACGCGCACAAATATCATAGAAGGCGGCAATTTAACAAGCTCGCAAGACTGAATTTGATAAGCGCCAAAAGTAAGgttataaagaaaatgaaaaatgcgAGCCTGTCGAGGAAAACGTTGGGTATTGTTAAGAATCCTCTGAAATCGAAAATTCAATTCGCGGCTAGTTTAAATCTCATGGCCAACAAAAAAGACATTAAAGAAATACAAAAACAGTTCGTTATTGTGAATAAAGATCTTTTAGAAATGATACGAAACTCCAAATGCAATTATTGCAAgaaatcgatgataaaaaataaattgctcAAACATCTCCGTCTGATGCATAAAGTCGCGATTCCGCCGTATCAGTGCTACGATTGTTTGATACCTCTCGGCGGCAGGTCGGAATACAAACGGCACATCTCTCAACTTACGTGCAAGAGGCACTCGGTAAGTAATACGACGGATCATGTTCCGGAAGAGAATTCTCGTCCGGAACAAGTTAAAACTTTCAACTGTAAAATATGCTCGGACTCGTTTACTTCAGAAGAAGAATTCGGGAAGCATATTGTGTCGGCACATATTCTCGACATGCGTTCCATCGAAACGCCGTTAATGTGCAGCCAGTGCAATAGCAGTTACGAAATTGCCGATAACTTGAATAAACACATAATGAGCGGTGAATGCATCTTAAACATCAACTGCAACTTATGCAATAACGATTACAGCAGTATTAATGATTTCGACGCGCATGCGTGTAGTGCGCCGACCGTCATTAAAACAGAACCGGACATCGAAATCGAAGTCGACGACGAAATTGATGTCGACGGAGATATCGAAGTCGCAGATGAAAACGACGAAAACAATACCGATCCTTCGAATAAACTCGACGGCTTTACAAGGCCCAAGGAGTGTCCGATTTGCAGTAAACAGTATAGTtcgtacaataatttaaaaagacaTATGTTAGTTCACGATAACAGAAACAAACCGTTCAAGTGCAGTTTTTGTTCAGTATCATTCCGGTTGGTAACCGAACTAAAAAATCACGCGTATTTGGAACACAACGAAATAGTTGACTCAAACGACGGTTTAAATTTCacgtgtgacgtttgcaacgtCGAATTCGACGATATCACGAAATGGACCGAACACCGAGCACAGCATTCCGAAAGCTTTACTTGTAAGACGTGCAAGAAGTCGTTTATTTCAAACTTCGAACTGACCACGCATATGGAAACGCATAAGTTAAAGGTGAAAATATACACTTGTTCTCTTTGTCCGATGTCGTACAATAGCGTGGAGCTGTTGAATGAACACATGGCCAAGCATACAACCGTCATCAACGGACACGCGGTTACGCCGCCCGGATCCGAGAGATTCGAATGCAACGTGTGCCTCGCGTCGTTGGGATCGAAGAACTCGCTGTGGAAACACAAACAGATCCACGTACGCAAAGGTGAACCGTTCGGCAAGGGTACAAAACAAAAAGTTTGCAACATTTGCAATAAAGTCGTCTTAAGTTTAACGGCGCtaatttctcataagaaaacacATTCGTTGGCGCGTCCGACCGGACCGAGCTACAAGTGTCGCGTGTGCCgacaaatattttatagctACATGCCTTTTTATCGGCACATGAAAAAAGCTCATTCGGAAAAATTACCAAAGAGGGACAAGAGTCAAACGGAATCCGTTCAGAATAAGACCGATAACGAGGACGAACGGAATTCGGTATCGTCGGAGTCTGCGATTAAAAGTTCGAAGTTCCCTTGCGAATATTGCGACAAGGTGTGCATTTCGCACGCAGGTTTATTGAAACACAAAGCCATACACAATCAGCCGACAGACGTCTCCGAAAATGTTACGGCGCCAACAGAGACGCGAGAAGCGCACAAGCATCCCTGTAACTATTGCGATAAAGTATGTATGACGGCCGCAGCTCTGGTGAGACACAAAACTGTACACTGGAACGATCCGCTTCCAGAAGAAAGGGCACCGCTCAAACAATCAACACCGCAAAATAGGGGCTTCCCGTGCGAAAATTGCAACGAGGTTTGCTCTACTCAGTCAGAATTAATCAAACACAGTGCGTCGCACGAAACTGAATATACACTGGACAACGAAGTCAGCCATTCAAAAGTAGATTATTCTTGCGACGAATGCGACAAAATATGCACGACCGCAGCGGCACTAGTCAGGCACAAAACGGTACATTGTCCGGATAAAAGTGAATTTCCTTGCGATTCCTGTGATAAAATTTGCATCACGTTGGCCGCATTAGTACGACATAAAACCGTTCACACGCGAAACGATTCGCTAGAGATCAAAGAACAAGCGCCCGCTCTGTCGCAACTAAAATCGTTCCCGTGCGACCGTTGCGATAAAGTTTGCTCGACCATGGCCGCTTTAGTTAAACATAGAACTGTACATTTCGGTATGCCGAAACTTACCGTTGCCAAAAAAATCAAGCAAGCTCGCTTTGCTTGCAAACTGTGTCCTAAATCTTTCATTACCGAAGCGGCGCTGATAGTTCACAAAGGTTGGCACGTCCGCGTGGCGGGGACGAAATGTCATATTTGTTTGGCGCGCTGTAAAAGTTTTAAACATTTGCGCATACACGTCAGGCAATATCATACGGGTACGACGTCGAAACCGAAAAAGAAAATGGTATCGGACCGGCATTGTCCGCAGTGTCGAGTGTCATTCTCATCTGCTGAAATATTGCAAGAGCATTTATTGTTACACAAAAACCAAGAGAGACACGAGAAAATGTGGGAATGCGATCAGTGCGATAGAGGTTTTAGTAGATACGATACACTGTGCAAGCATCTCAAAGAAACCCACGACCATGTCGTGACCGAATCGGAACGCGAAGCGTTGTTTACGAAAGCGTCGATGCCGCAAGTTGAAGTGTCCGAAACGAACGGAGTAGACATCAATTATCGTTGGTATACGTGCACGATATGCAACGTGTCGTACGAAAGTGCCAAAGCGTTACGATCTCATATATCGACCCATATGCCGTCGGGAACGATCATAAGTGCAGTCGGTGCTGAAGCGTCGTCGTCTCACGAACCGACCAAACCGTCTAAAAACGTAAATGGCAGAAAGTTCACGTGTAGAGTATGtttgaaagttttttcaaaacgtATACTGCTATCCAATCATATTAGAGACCTACATTTTGATGCTAGTTCGGTGTATAAGTGTCGTAAATGTCAAAATGTTTACATGACAAAACAGAGCCTGTTTAGGCATGAAAATATTGCACACAGTTCCGGATAA
Protein Sequence: MEVSRTRYLASCRLCLKDDACTVPIFGDGDNLAQKILSCVSVQVFKTDLFPTIVCEFCMERIDSWYNFKKICDDSQAKLREWLNTMYHGNVQNTSFIVKEEPTDCDFNYDFSIEDDIIETDITVKSELDCGMGELHTTNINEDARSTTSTNVNIIFENENGTSPVSTNYTMDENDIISDIHSETNASVSCSDITARDSSSFADAFQQKTKKRKRYLKGKKPLPKCDDCGKRFANKQNLLRHKVTLHGLVPVNNRTMNPHNNQLSSPKEVENRTELDTNESNTMSSVNSAEKENTNDLQDDQTERIPQITQVESIRLSPDVPDFRGFECENNLQSNVSPTQEFDQGEENLQVDNSVSEENSDLFACKICLKPFSNVANARRHEVNAHKYHRRRQFNKLARLNLISAKSKVIKKMKNASLSRKTLGIVKNPLKSKIQFAASLNLMANKKDIKEIQKQFVIVNKDLLEMIRNSKCNYCKKSMIKNKLLKHLRLMHKVAIPPYQCYDCLIPLGGRSEYKRHISQLTCKRHSVSNTTDHVPEENSRPEQVKTFNCKICSDSFTSEEEFGKHIVSAHILDMRSIETPLMCSQCNSSYEIADNLNKHIMSGECILNINCNLCNNDYSSINDFDAHACSAPTVIKTEPDIEIEVDDEIDVDGDIEVADENDENNTDPSNKLDGFTRPKECPICSKQYSSYNNLKRHMLVHDNRNKPFKCSFCSVSFRLVTELKNHAYLEHNEIVDSNDGLNFTCDVCNVEFDDITKWTEHRAQHSESFTCKTCKKSFISNFELTTHMETHKLKVKIYTCSLCPMSYNSVELLNEHMAKHTTVINGHAVTPPGSERFECNVCLASLGSKNSLWKHKQIHVRKGEPFGKGTKQKVCNICNKVVLSLTALISHKKTHSLARPTGPSYKCRVCRQIFYSYMPFYRHMKKAHSEKLPKRDKSQTESVQNKTDNEDERNSVSSESAIKSSKFPCEYCDKVCISHAGLLKHKAIHNQPTDVSENVTAPTETREAHKHPCNYCDKVCMTAAALVRHKTVHWNDPLPEERAPLKQSTPQNRGFPCENCNEVCSTQSELIKHSASHETEYTLDNEVSHSKVDYSCDECDKICTTAAALVRHKTVHCPDKSEFPCDSCDKICITLAALVRHKTVHTRNDSLEIKEQAPALSQLKSFPCDRCDKVCSTMAALVKHRTVHFGMPKLTVAKKIKQARFACKLCPKSFITEAALIVHKGWHVRVAGTKCHICLARCKSFKHLRIHVRQYHTGTTSKPKKKMVSDRHCPQCRVSFSSAEILQEHLLLHKNQERHEKMWECDQCDRGFSRYDTLCKHLKETHDHVVTESEREALFTKASMPQVEVSETNGVDINYRWYTCTICNVSYESAKALRSHISTHMPSGTIISAVGAEASSSHEPTKPSKNVNGRKFTCRVCLKVFSKRILLSNHIRDLHFDASSVYKCRKCQNVYMTKQSLFRHENIAHSSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511072;
90% Identity: -
80% Identity: -