Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000089.1:341276-348178[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00052 0.014 16.3 0.4 2 22 224 244 224 246 0.90

2 26 0.036 0.99 10.6 0.2 1 21 363 383 363 386 0.88

3 26 0.68 19 6.5 3.0 2 23 471 492 470 492 0.95

4 26 4.7 1.3e+02 3.9 0.1 1 20 499 518 499 520 0.94

5 26 0.19 5.1 8.3 0.1 1 23 548 571 548 571 0.95

6 26 0.12 3.3 8.9 0.1 2 21 583 602 582 603 0.93

7 26 3.7e-06 0.0001 23.1 0.3 3 23 684 704 683 704 0.98

8 26 0.032 0.88 10.7 1.6 1 23 711 734 711 734 0.90

9 26 0.33 9 7.5 0.1 1 23 746 768 746 768 0.95

10 26 4.1e-05 0.0011 19.8 2.6 1 23 772 794 772 794 0.98

11 26 0.02 0.55 11.3 0.3 1 23 801 823 801 823 0.97

12 26 0.17 4.7 8.4 0.2 1 23 840 862 840 862 0.98

13 26 0.26 7.3 7.8 0.3 2 23 877 898 876 898 0.97

14 26 0.14 3.7 8.7 2.5 1 23 908 931 908 931 0.98

15 26 0.006 0.16 13.0 1.2 1 23 970 992 970 992 0.96

16 26 0.058 1.6 9.9 1.2 1 23 1014 1036 1014 1036 0.95

17 26 0.0091 0.25 12.4 0.3 1 23 1052 1074 1052 1074 0.94

18 26 0.00031 0.0087 17.0 0.4 1 23 1091 1113 1091 1113 0.97

19 26 0.026 0.71 11.0 0.3 1 23 1120 1142 1120 1142 0.96

20 26 0.0029 0.079 14.0 0.6 1 23 1163 1185 1163 1185 0.97

21 26 0.0015 0.041 14.9 0.1 1 23 1202 1224 1202 1224 0.92

22 26 9.6 2.6e+02 2.9 0.3 3 23 1266 1286 1265 1286 0.94

23 26 0.00061 0.017 16.1 2.0 2 23 1297 1319 1296 1319 0.94

24 26 0.00013 0.0037 18.2 0.3 1 23 1355 1377 1355 1377 0.99

25 26 0.0005 0.014 16.4 1.0 1 23 1412 1435 1412 1435 0.96

26 26 0.032 0.88 10.7 1.7 1 23 1442 1465 1442 1465 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00052	0.014	16.3	0.4	2	22	224	244	224	246	0.90
2	26	0.036	0.99	10.6	0.2	1	21	363	383	363	386	0.88
3	26	0.68	19	6.5	3.0	2	23	471	492	470	492	0.95
4	26	4.7	1.3e+02	3.9	0.1	1	20	499	518	499	520	0.94
5	26	0.19	5.1	8.3	0.1	1	23	548	571	548	571	0.95
6	26	0.12	3.3	8.9	0.1	2	21	583	602	582	603	0.93
7	26	3.7e-06	0.0001	23.1	0.3	3	23	684	704	683	704	0.98
8	26	0.032	0.88	10.7	1.6	1	23	711	734	711	734	0.90
9	26	0.33	9	7.5	0.1	1	23	746	768	746	768	0.95
10	26	4.1e-05	0.0011	19.8	2.6	1	23	772	794	772	794	0.98
11	26	0.02	0.55	11.3	0.3	1	23	801	823	801	823	0.97
12	26	0.17	4.7	8.4	0.2	1	23	840	862	840	862	0.98
13	26	0.26	7.3	7.8	0.3	2	23	877	898	876	898	0.97
14	26	0.14	3.7	8.7	2.5	1	23	908	931	908	931	0.98
15	26	0.006	0.16	13.0	1.2	1	23	970	992	970	992	0.96
16	26	0.058	1.6	9.9	1.2	1	23	1014	1036	1014	1036	0.95
17	26	0.0091	0.25	12.4	0.3	1	23	1052	1074	1052	1074	0.94
18	26	0.00031	0.0087	17.0	0.4	1	23	1091	1113	1091	1113	0.97
19	26	0.026	0.71	11.0	0.3	1	23	1120	1142	1120	1142	0.96
20	26	0.0029	0.079	14.0	0.6	1	23	1163	1185	1163	1185	0.97
21	26	0.0015	0.041	14.9	0.1	1	23	1202	1224	1202	1224	0.92
22	26	9.6	2.6e+02	2.9	0.3	3	23	1266	1286	1265	1286	0.94
23	26	0.00061	0.017	16.1	2.0	2	23	1297	1319	1296	1319	0.94
24	26	0.00013	0.0037	18.2	0.3	1	23	1355	1377	1355	1377	0.99
25	26	0.0005	0.014	16.4	1.0	1	23	1412	1435	1412	1435	0.96
26	26	0.032	0.88	10.7	1.7	1	23	1442	1465	1442	1465	0.96

Sequence Information

Coding Sequence: ATGGAGGTATCTCGAACGAGATATCTCTCTTCTTGTAGACTGTGTCTTAAAGATGATGCATCTACCGTTCCTATTTTTGGTGATGGAGATAATTTGGcgcaaaaaatattgtcatgCGTTTCAGTTCAGGTGTTTAAAACTGATCTATTTCCGACAATCGTATGCGAATTTTGTATGGAGAGAATTGATTCGTGGTACAATTTTAAGAAGATCTGTGATGACTCCCAAGCAAAGCTACGAGAATGGCTGAACACGATGTACCACGGCAATGTCCAGAACACTagctttattgtaaaagaaGAACCTATACAGTGCGACTACAACTATGATTTTTCTGTAGAAGATGATATTTTAGAAACGGATATAACGGTGAAATCAGAACTGGGTTGTGAAGTTGGCCAGCATGACGCAACTAATATAAACGACGATGCCAGATCGACAACATCCACcaatgtaaatattatatttgaaaatgaaacagCCACTTCGCCCGTCTCCACCAACTATACAATGGACGAAAACGGTATTATCAGTGACATTCACAGTGAAACAAATGCCAGTGCGTCGTGTAGTGAGATAACAGCTCGAGACAGCAATAGTTTTGCCGGCGCGTTTCAACAGAAAATCAAGAAAAGGAGAAGATATCTGAAAGGAAAAAAACCACTTCCAAAGTGCGATGACTGCGGTAATAGATTCGCCAACAAACAGAATTTAATTAGACACAGAGTAGCTCTTCACGGTTTTGTACCGGTTAATAATCGAACTACGGACCTTCGCGGCGAGCGACAATCTTCTCCCAACGAGGTCGAGAATGGAATGGAACTCGACACCAACGAATCGAATACGATGTCGTCGATTAATTCTGCGGAAAAAGACAATGCCGATAATCTGCAAGACGATCGAACGGAAGGAATTCCGCAAATTACACAGGTGGAAAGTATTCGGTTGAGTCCGGATGTTCCTGATTTTCGAGGATTTGAACTTGAAAACAATTCGCAGTCGAGCGTTTCCCAGACGCAAGAGTTCGGTCGAGGTGAAGAGAATTTTCAAGCGGATAACGGTGTTCCTGAAGAAAATTCGGATCTGTTCGCTTGTAAAGTTTGCCTGAAATCGTTCTCGAACGTCGCCAATGCAAGAAGACACGAAGTGAACGCACATAAATATCATAGAAGGCGACAATTTAAACAGCTCACTAGACTGAATTTGATAAGTGCTAAAAGTAaggttataaagaaaataaaaaattcgaactTGGCGAGAAAAACGTTGGGTATTGTTAAGAACCCACTGAAATCGAAACTTCAATTCGCGGCAAGTTTAAATCTTATGGCCAATAAAAAGGACATTAAGGAAATACAAAAACAGTTCGTTATTGTGAATAAAGATCTTTTAGAAATGATACGAAATTCCAAATGCAGTTACTGCAAGAAATCAATGAACAAAACTAAATTGCTCAAACATCTCCGTCTGATGCATAAAATCGCGATTCCGCCGTATCAATGTTACGATTGTTTAATACCTCTCGGCGGCAGGTCGGAATACAAACGGCACATCTCGCAAGTTTCCTGCAAGAGACACTCGATAAACATCACGACGATCCATGCTCCGGAAGAAAACTCGCGTCCGGAACAAGTTAAAACTTTCGAGTGTAAAATATGCACGGACTCGTTTCCTTCGGAAGAAGAATTTGGGAAGCATATTGTGTCGGCACATATTCTCGACATGCGTTCTATCGAAACGCCGCTAATGTGCAGCCAATGCAACAACAGTTACGAAATTGCCGATAACTTGAATAAACACATAATGAGCGGCGAGTGTATTCTAAATATTACCTGCAACTTATGCAACGGCAATTACAGCAGTACTAGTGAATTCGACGCGCACGAATGTAGTCCGCCCGCCATAATCAAAACAGAGCCCGACATCGACGTCCAAATCGAACCCGATGACGAAATCGAGGTCGACGAAGAAATCGAAATCGCAGATGAAATGGAAGAAGACGACGCCGAACCTTCGAATAAACTCGACGGCTTTTCAAGACCCAAGGACTGTCCGATTTGCGGTAAACAGTATAGTtcgtacaataatttaaaaagacatATGTTAGTTCACGACAACAGAAACAAACCATTCAAGTGTAGTTTTTGTTCAGTATCGTTCCGTTTgaaaaccgaactaaaaaatcACGCGTATTTGGAACACAACGAGATAGTTGACTCAAACGACGGTTTAAATTTCACTTGTGACATTTGCAATGTCGAATTTGACGATATCGCAAAGTGGACCGAACACAGAGCACAGCATTCCGAAAGCTTTACTTGTAAGACGTGTAAGAAGTCGTTTATTTCGAACTTTGAACTGAGCACTCATATGGAAACGCATAAGTTAAAGGTGAAAATATACACTTGCTCTCTTTGTCCGATGTCGTACAACAGCGTGGAGTCGTTGAACGAACACACGGGCAAACATAGAACCGTTATCAACGGGCATGCCGTTACGCCGCCCGGTTCCGAGAGATTCGAATGCAACGTGTGCCTCGCGTCGTTGGGATCGAAGAATTCGCTGTGGAAACACAAACAGATTCACCTGCGCAAGGGAGAACCGTATGGGAAGGGTACAAAACATAAAGTTTGCAACATTTGCAATAAAGTCGTGTTGAGTTTAACGGCTTtgatttctcataaaaaaacacacgcGTCGATGCGACCGTCCGGGCCGAGTTACAAGTGCCGCGTTTGTCGACAGATATTTTATAGCTACATGCCTTTTTATCGACACATGAAAAAAGCTCATTCGGAAAGATTGCCAAAAAGAGACGGGAGTCAGATGGAACCCGTTCAGAATAAGACCGATAACGAGGACGAACAGAATTCCGTATCGTCCGAACCGGGAAATAAAGTTTCAAAGTTCGCTTGCGATTATTGCGACAAAGTGTGCATTTCGCACGCGGGTTTATTGAAGCACAAAGCCATACACAGTCAACCGGCAGACGACTCGGAAAACGTTACGGCGCCGACCGAAACTCGAGAAGCGCCCAAGCATCCGTGTAATTATTGCGATAAAGTATGTCTCACGGCCGCAGCTCTAGTAAGACACAAAACTATACACTGGAACGATCCACTGCCGGAAGAAAGTACGCCGCAAAATACCGGATTCGCGTGCGAAAATTGCAACGAAGTTTGCGCTACCGAGTCAGAATTAATTAAGCACAACGCATCGCACGAAACCGAATACACATTGGACAACGAAGTCACTCATTCGAAAGTAGATTATCCTTGCGACGAATGCGACAAAATATGCACGACCGCCGCCTCACTAGTCAGACACAAGACTGTACATTGTCCCGATAAGAGTGAATTTCCCTGCGATTCCTGTGATAAAATTTGCATCACGTTGGCGGCACTGGTGCGACATAAAACCGTTCACACGCGAAGCGCTCCTCAGGAGATTAAAGAACAAACGCCTGCTTCATCGCAGCTGAAATCGTTCCCGTGCGATCGCTGCGATAAAGTCTGCTCGACCATGGCCGCTCTAGTTAAACACAGAACTGTGCATTTCGGCATGCCGAAACTTACCGTTGCAAAGAAAATCAAGCAAGCTCGCTTCATGTGTAAAATGTGTCCTAAATCTTTCATCACAGAAGCGGCCCTGATAGTTCATAAAGGCTGGCACGTCCGAGCGACGGGACTGAAAGACAGTAGCGGAACTGCGAACGAAGAGGCAAAGTCCGGAACCAAGCAATATCATACGGGCACGACGTCGAAACCGAAAAAGAAAATGGTATCGGATCGCCATTGTTTGCAATGTCGGGTTTCGTTTCCATCCGCTGAAATATTACAGGACCATTTATTGTTGCACAAAAATCAAGAGAGACATGAGAAAATGTGGGAATGCGACCAGTGCGATAGAGGTTTCAGCCGTTACGATACTCTCTGTAAGCATCTCAAAGACACTCACGATCATACCGTAACTGAATCCGAACGCGAAGCGCTGTTTACGAAAGCGTCGATGCCACAGACCGCGCTACTCGATAAAAACGGAGTCGATGTCAATTATCGTTGGTATACTTGTACGATATGCAATCTGTCGTACGAGAGTGCCAAGGCGTTAAGATCTCATATATCGACCCACATGCCATCGGGAACGATTATAAGTGCGGTCGGCACTCAagcgtcgtcgtcgtcgtcgtctcAAGAACCGACCAAACCTTCTAAAAACGTAAACGGCAGAAAGTTCACGTGTAGAGTATGTTCGAAAGTCTTTTCCAAACGCATGCTGTTATCCAATCACATTAGAGATCTACATTTTGATGCTAGTTCGGTGTATAAGTGTCGTAAAtgtcaaaatgtttatatgacGAAGCAGAGTCTCTTTAGACATGAAAATATTGCACACAGTTCGGGATGA
Protein Sequence: MEVSRTRYLSSCRLCLKDDASTVPIFGDGDNLAQKILSCVSVQVFKTDLFPTIVCEFCMERIDSWYNFKKICDDSQAKLREWLNTMYHGNVQNTSFIVKEEPIQCDYNYDFSVEDDILETDITVKSELGCEVGQHDATNINDDARSTTSTNVNIIFENETATSPVSTNYTMDENGIISDIHSETNASASCSEITARDSNSFAGAFQQKIKKRRRYLKGKKPLPKCDDCGNRFANKQNLIRHRVALHGFVPVNNRTTDLRGERQSSPNEVENGMELDTNESNTMSSINSAEKDNADNLQDDRTEGIPQITQVESIRLSPDVPDFRGFELENNSQSSVSQTQEFGRGEENFQADNGVPEENSDLFACKVCLKSFSNVANARRHEVNAHKYHRRRQFKQLTRLNLISAKSKVIKKIKNSNLARKTLGIVKNPLKSKLQFAASLNLMANKKDIKEIQKQFVIVNKDLLEMIRNSKCSYCKKSMNKTKLLKHLRLMHKIAIPPYQCYDCLIPLGGRSEYKRHISQVSCKRHSINITTIHAPEENSRPEQVKTFECKICTDSFPSEEEFGKHIVSAHILDMRSIETPLMCSQCNNSYEIADNLNKHIMSGECILNITCNLCNGNYSSTSEFDAHECSPPAIIKTEPDIDVQIEPDDEIEVDEEIEIADEMEEDDAEPSNKLDGFSRPKDCPICGKQYSSYNNLKRHMLVHDNRNKPFKCSFCSVSFRLKTELKNHAYLEHNEIVDSNDGLNFTCDICNVEFDDIAKWTEHRAQHSESFTCKTCKKSFISNFELSTHMETHKLKVKIYTCSLCPMSYNSVESLNEHTGKHRTVINGHAVTPPGSERFECNVCLASLGSKNSLWKHKQIHLRKGEPYGKGTKHKVCNICNKVVLSLTALISHKKTHASMRPSGPSYKCRVCRQIFYSYMPFYRHMKKAHSERLPKRDGSQMEPVQNKTDNEDEQNSVSSEPGNKVSKFACDYCDKVCISHAGLLKHKAIHSQPADDSENVTAPTETREAPKHPCNYCDKVCLTAAALVRHKTIHWNDPLPEESTPQNTGFACENCNEVCATESELIKHNASHETEYTLDNEVTHSKVDYPCDECDKICTTAASLVRHKTVHCPDKSEFPCDSCDKICITLAALVRHKTVHTRSAPQEIKEQTPASSQLKSFPCDRCDKVCSTMAALVKHRTVHFGMPKLTVAKKIKQARFMCKMCPKSFITEAALIVHKGWHVRATGLKDSSGTANEEAKSGTKQYHTGTTSKPKKKMVSDRHCLQCRVSFPSAEILQDHLLLHKNQERHEKMWECDQCDRGFSRYDTLCKHLKDTHDHTVTESEREALFTKASMPQTALLDKNGVDVNYRWYTCTICNLSYESAKALRSHISTHMPSGTIISAVGTQASSSSSSQEPTKPSKNVNGRKFTCRVCSKVFSKRMLLSNHIRDLHFDASSVYKCRKCQNVYMTKQSLFRHENIAHSSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530579;
90% Identity: -
80% Identity: -