Xxan022893.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:20051148-20055271[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.042 0.85 10.7 2.4 1 23 270 294 270 294 0.98 2 18 0.002 0.041 14.9 0.3 1 23 300 324 300 324 0.96 3 18 1.2e-05 0.00024 21.9 4.2 1 23 330 352 330 352 0.99 4 18 0.0027 0.055 14.5 4.4 1 23 705 728 705 728 0.97 5 18 0.013 0.27 12.3 1.4 3 23 735 756 733 756 0.96 6 18 1.4e-06 2.9e-05 24.8 3.6 1 23 855 877 855 877 0.98 7 18 1.4e-05 0.00029 21.6 1.6 1 23 886 909 886 909 0.98 8 18 2.6 53 5.1 0.9 1 12 921 932 921 935 0.88 9 18 2.2e-06 4.6e-05 24.1 0.8 2 23 955 976 954 976 0.97 10 18 9.5e-06 0.00019 22.2 1.9 1 23 983 1005 983 1005 0.99 11 18 0.074 1.5 9.9 0.2 2 23 1013 1033 1012 1033 0.90 12 18 3.3e-05 0.00067 20.5 4.7 1 23 1039 1061 1039 1061 0.98 13 18 0.0017 0.035 15.1 2.1 2 23 1067 1089 1066 1090 0.95 14 18 0.35 7.2 7.8 3.8 1 23 1094 1117 1094 1117 0.96 15 18 0.00084 0.017 16.0 0.7 3 23 1125 1146 1124 1146 0.96 16 18 7.1e-06 0.00015 22.6 0.5 1 23 1152 1174 1152 1174 0.98 17 18 2.4e-07 4.9e-06 27.2 1.6 1 23 1180 1203 1180 1203 0.98 18 18 0.00062 0.013 16.5 1.1 1 23 1209 1232 1209 1232 0.93
Sequence Information
- Coding Sequence
- ATGGATAAACGACTAGTAATTGAAGCGGAAGGATTAAAACAGGATATATGTAGATTCTGTTTAACGATGGATGTTCAACTAGCCCATATTTATAGCGGTTCAAGTAGTCTTGGGAGTACAATAGCTGAAGCTGCCATGGAATGTGCCACTATTCAGATTTCACCGAATGATGGCTTGCCAATGTACGTCTGTAAAGATTGCTTTCTAAAACTTCAAGACActcaacaatttaaaaaaatggtcctCAAATCCGACGCTGTGTTAAGAATTTATCTCAAACAGCTGCGTATTGACCGCCACTCAACAAGAAGCAGTTTTCCCATAAAGGATGACCCTTGTGACCTTGACGAGGCACTGTGCATGGATGAAAATGGCGACGACAAAATGAAGACTGAAGACACCGACAATAATATCACGGCATCAACGACGTTGGAAGACATCACTTCTAATTCAGAAGAGAATATTAATTTAGTAGGTAATAGTTCCCCTGACAAACTAAGTTCCTCCATTCCAAAAGACAGCGGATTAGATGCACAAAGCGAATTCGAAAATAGAAATCTCGTAGATAGAGAaataatagacgctgatgaatCTGATAATCGAGAAATAAGTGGAACTACTTCTGACTATGTTGTAGAAATGGATGCAACAAGTTCTGAGACAGAAGGTGATGCAGACAATTGTGAAAAGGAATCGGGGTCAAGAAGTGATGGTTCAGAAGAACAAACGCATGACGGTTCACAGAAAGTTAAAGTGAAAAAAGTAGCCTTCAGTGAAGGAGAAAGGCATTCGGATCGTAAAAAGCAGCACAAATGTCACATGCCAGGATGCAGCAAAGTTTACGGGAAAGCATTGTATCTTCGTGTTCATTTAAGGCGACACACCGGAGAAAAACCCTTTGTATGCGATTGGCCGTTTTGCAGTAAAGATTTCATCCGCTCCGATGAATTGCTAAGACATAAGAAAATTCATACTGGGAAAAGACGGTTCCAGTGTCTCGAATGCGATAAGAAGTTTATGCGTAGGGATCATTTATCAAGGCACATTAAAACTCATACGAAACAAAAGACAATGGAGGCAGCTACATCAACTCAACCTGCTTCTTTAGACACTTCTGGCGGCGCTGAAAAAATGTTGATCACTATTACTACAGAAACTGACCAATCGGATTTAACTATTGCCGATGGTTTAGAATCTTCGATATTGAGTTGTATCAAGCCTTTACCGAAATCCACTGATGGAGTTTGTGAAACGCCTACAGAAAAAGGCATAAGCAATGAAACAACACAAACACAAGCAAATACCACAAAAATTAATGAATCTTTGAGTGAGCGAATTGATAGTGTAATCTCAAACAATGAAAAAGTTTCGTCAGCCAGTTTCCATACAGGAAATAATACTGCATCAAGTTTAAAATCCGACCAGCAAGAAAAAACCAACTCAGAGTCGGCTGATCAAAGTTTAGAAGCTAAAAGCGACGAAACTTTGGGAAATATTAACATTGCAGAGTGTGAAAAAATAGATAGTAATAAATCCAATGATCACGAAACAAGTGGGAATATTTCGGATAATTCTTCAGTATCGGACCATACCGATGACTGGGTGTTAGAAGAAGATTCCACTTCTGAAACAGAAGAAGATTCCGGTTCTTCTGACGATGCCGCTGAGAATAAatttaagaataataaaaaaaacaatttaaaacgtAAAATGTCTGAAGAAACCTTTTCTAGAAAACGTGTTTTACGTAGACATACAAAGCGTACACCAAACGAACAAGAACCATCGGATACTTTTAATAAAAGCAATTCTTCAAAGGAAAATGAGAACTTATTGATTAGTAATGCAGTTGAAAAACTAATTTCCGCCAATTCAGAGAATCACAATTTGGACGTGCAAACCAATGAACCTTTAGAGAAATCGAATATCGCAGATCTTGacatattaaatactaataaACGCAGCGATCAAGAAAAATCTCGATATTCTTTGAACGATAACACTTTGGACAATGCTGTAGAAAGGGATTATGTTGACGCTTTACATTCAGAAGAAGTGGACCCGACAGATGATAATTCCAAAAAGGAAtctgagaaaaataaaaacccattttttaaatgtaaaatatgtatgaAATTCTATAATAGGAGAGATAATTTACATAGACATATTTTCACAGcacataaaaataaacttgttaATTGTCAAATATGCGAAAAAAGCTTTGTTTGCAAAGATGGTTTGAATagacatgtaaaaaaaattcatggctCGATTGAGTgttctaaaaatgaaaataaatcaacGTCAAACGAACAAGAAATATCAAGTGAATTAGAAAAAATGAACTCCTCGAAGGAAAATGACAATTCGATAAACAGTAAATCGGCTAACCAGAGTTTGAAAACGCAGAGCGAAAAGTCTTTAGAAAAAACAAATCAGGAAAATATATCGGACGCTAATAAACGCAAGGATGATTTTGAAGAAGATGTTTTTGACAACTGGCGTTCAGAAAAAGTGGTGTCGGAAGAAGATAGTTCTTACGAGAATAAAAGAATCGATTTCAAAtgtgaaatatgtaaaaaatcctATACTAGAAAAGATAATTTACGAAGACATTTGACAAAACATGAAAGCAATTTGACAAAGCATGAATTTAAGTGTGAAAAATGCGAAAAAAACTATGCTTCTAAAGACACTTTACTTAAACATATGAGAAAAGTCCatgaatcaaataaaaatgaGAATGAAATCGGCATATATCGCTGCAATACTTGTAATGAAAAGTTTAAAGAACGTCGCGAATGTTACTTCCATGAAGTCAGACACTTCGATAAGAATTACCAACCGGGCAAACCTATTCAGTGCAATGTGTGCGGGAAATCGTTTGAGAGactatataaattaaaagaGCACATCAGGAGACATGACGACGACGATAGGCCTTTTCAATGCACTAAATGTGATAAAAAATTCAAGGTTAAAAACGAATTAGCAAGTCACCAACGAGTCCACGGCGACACTAGATTTTGCTCTGTATGTCCCATTTGTGGCAAAACTGTAAAGAGTAACATTCAGCGTCATATCAACGAACGTCATTCAGAAAATAGACCATACATGTGTCACAAATGTGGAAAATCATACAAAGATATGACCAATTTAAAAAGACATAAAGAAACTCACGATGGAAAAATGATGGAATGTAAAATTTGCAACAAAAGTTTTAAAGGGAAAATATTGTTGCGGGGACATATTAAAAATAGGCACCACGGAAaagaatttaaatgtaaaatttgttttaaaatttccagTTCGAAGCACACTTTAAAATTTCATATTGAAAGAGTTCATCAAAAGAAACATACTGTAGATTGTTCtgaatgtaaaaaaacattttcttctcCAAGGGGTTTAATGTTGCATAAAAAATCAGCCCATAGCAGAGCGAAACCTTTTGAATGTCAAGAATGCGGTAAAGGTTTCTCTAGCAAGGATTTCTTGGTTATGCACCTAAGGATGCACAGCGGGGAGAAGCCCTTCAAATGTGACGAGTGCGATAAACGTTTTTCTAGAAATGACAATCTCAAAATACATTTAAAGAAAGTTCATGGCAAGTTTATGAAATACAAATGTCAAGTTTGCGACAagaaattcaaaatgaaacgcGATTTAGATAGTCACATCGAAGATAATCACAATGTGCCCATGTAa
- Protein Sequence
- MDKRLVIEAEGLKQDICRFCLTMDVQLAHIYSGSSSLGSTIAEAAMECATIQISPNDGLPMYVCKDCFLKLQDTQQFKKMVLKSDAVLRIYLKQLRIDRHSTRSSFPIKDDPCDLDEALCMDENGDDKMKTEDTDNNITASTTLEDITSNSEENINLVGNSSPDKLSSSIPKDSGLDAQSEFENRNLVDREIIDADESDNREISGTTSDYVVEMDATSSETEGDADNCEKESGSRSDGSEEQTHDGSQKVKVKKVAFSEGERHSDRKKQHKCHMPGCSKVYGKALYLRVHLRRHTGEKPFVCDWPFCSKDFIRSDELLRHKKIHTGKRRFQCLECDKKFMRRDHLSRHIKTHTKQKTMEAATSTQPASLDTSGGAEKMLITITTETDQSDLTIADGLESSILSCIKPLPKSTDGVCETPTEKGISNETTQTQANTTKINESLSERIDSVISNNEKVSSASFHTGNNTASSLKSDQQEKTNSESADQSLEAKSDETLGNINIAECEKIDSNKSNDHETSGNISDNSSVSDHTDDWVLEEDSTSETEEDSGSSDDAAENKFKNNKKNNLKRKMSEETFSRKRVLRRHTKRTPNEQEPSDTFNKSNSSKENENLLISNAVEKLISANSENHNLDVQTNEPLEKSNIADLDILNTNKRSDQEKSRYSLNDNTLDNAVERDYVDALHSEEVDPTDDNSKKESEKNKNPFFKCKICMKFYNRRDNLHRHIFTAHKNKLVNCQICEKSFVCKDGLNRHVKKIHGSIECSKNENKSTSNEQEISSELEKMNSSKENDNSINSKSANQSLKTQSEKSLEKTNQENISDANKRKDDFEEDVFDNWRSEKVVSEEDSSYENKRIDFKCEICKKSYTRKDNLRRHLTKHESNLTKHEFKCEKCEKNYASKDTLLKHMRKVHESNKNENEIGIYRCNTCNEKFKERRECYFHEVRHFDKNYQPGKPIQCNVCGKSFERLYKLKEHIRRHDDDDRPFQCTKCDKKFKVKNELASHQRVHGDTRFCSVCPICGKTVKSNIQRHINERHSENRPYMCHKCGKSYKDMTNLKRHKETHDGKMMECKICNKSFKGKILLRGHIKNRHHGKEFKCKICFKISSSKHTLKFHIERVHQKKHTVDCSECKKTFSSPRGLMLHKKSAHSRAKPFECQECGKGFSSKDFLVMHLRMHSGEKPFKCDECDKRFSRNDNLKIHLKKVHGKFMKYKCQVCDKKFKMKRDLDSHIEDNHNVPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530559;
- 90% Identity
- -
- 80% Identity
- -