Xxan013229.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754470.1:34071757-34078715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00013 0.0027 18.6 1.4 1 23 145 167 145 167 0.98 2 16 2e-05 0.00041 21.2 6.2 1 23 173 195 173 195 0.98 3 16 2.9e-05 0.00059 20.7 4.5 1 23 201 223 201 223 0.97 4 16 0.00062 0.013 16.5 1.7 1 21 229 249 229 250 0.94 5 16 5.3e-07 1.1e-05 26.1 0.2 1 23 257 279 257 279 0.98 6 16 3.5e-05 0.00072 20.4 0.3 1 23 424 446 424 446 0.98 7 16 2.7e-05 0.00056 20.7 4.6 1 23 452 474 452 474 0.97 8 16 1.3e-05 0.00027 21.7 2.1 1 23 480 502 480 502 0.98 9 16 0.0075 0.15 13.1 1.3 1 23 508 531 508 531 0.94 10 16 0.0032 0.066 14.2 0.5 1 23 543 565 543 565 0.97 11 16 0.0064 0.13 13.3 6.0 1 23 571 593 571 593 0.97 12 16 7.6e-06 0.00016 22.5 0.5 1 23 600 622 600 622 0.96 13 16 9.8e-06 0.0002 22.1 1.2 1 23 628 650 628 650 0.98 14 16 1.1e-05 0.00022 22.0 0.7 3 23 658 678 656 678 0.96 15 16 7.1e-05 0.0015 19.4 0.1 1 23 684 706 684 706 0.99 16 16 0.84 17 6.6 1.9 1 23 711 734 711 734 0.97
Sequence Information
- Coding Sequence
- ATGGATAATCTTGAATATAATTTTGAGCGCATTTGTCGCGCATGTAAATCGGAATCTGATGAAATGCAGTCTGTTTTCGAAACAAACGAAATAGCTGGACGACCTTCTAAGCTTGCCGAAATGCTCATGGCTTGTGCTTCAGTGCAGGTAATATGTGGTGACGGCCTACCAGATTCAATGTGTGTTACGTGCGTACGTCAACTTAGCGATGCCTAcacatttaaaagaaaatgcGAAGGCACTGATAATAGTTTACGAATTTATCTCAAGGAAAAAGGCATTAAACAAGAAGGACTACTACCTACTGTAAATGAAAATGACTTAGCAAACACAATCTTAGAATTTAAttctttgtataataatggcaGTGGCGGTATAAAAACAGAACCGTCGGAAGGACTGCACATTATTAAAAACGAAGATTCTGTGATTTTTTCGTGTAGTATTTGCGATAAAAGATTCGCGTCGCTGGAAGGTTTGAAATATCATAAAAAACGCCATACTGGAGACGATTTACATAAATGCAAAATCTGTTCGAAAGAATACACTCGATTGAGTCATTTACAAAGACATATTCGACAACATGGGCCTAGAAAAGTACACATCTgtaaaatttgcaataaaacgCTTACGAGACTGGAACATTTGAAACGTCACATGATAactcatgtaaaaaataaacctCATACTTGTGAGACTTGTAAAAGAGGCTTTAATAGACCGGATCATTTAATGAATCACGTAAAGCGATGTAAAGGCGATCGACCGTACGTTTGCGAAATATGTAACAAGGGCTTCAGTCGTGAAGATAGTTTGCAAGTACATATGAATTCCCACGCCCACAATGTCGATCTAAAACCCATGCTAGAATCACTCGACGATATAGAAAATCATTACATTGAAGTCGAAAATTACACCGGTTGCTCGGATTTTTCTGATTTCGAATCGTTCGACTCTGAAAACGAGTCTATAGAACAGCCTAATTTAGAACCGCAAGTAGATATAGTGGAATCGGACGATTTCCATAAACAGTTGGACGACGATGACGACGACGACAACGACGACGATAATATGGACGACAGAGACGACATTAAAGCGGAATTCGATATGGATGACGTCGACTTAAAGCCGCCCACTCCTGAAGTGCCGGTGAAACGCAAACGGGGCCGGCCTAGAAAAGGTGAAGTTCGACCGCCAAAACCTattaaaatgaagaaaaatcgaAAGGAGCATATCGAATTCAGGGCATCTCCAAACGCGGCTGGGAAATATCCGTGCGATCATTGCGATAAAGTGTTATCGACTTTGATCGGTCTGGAAATTCATATGCGCAAACATACCGGATTGAAATTATTCTCTTGCAGTGTGTGCAGTAAGAAATTCACACGTTCGAATCATTTGAAACGCCATCTGTCCATTCACGACGAAAATAAACCTTACACGTGTGACATTTGTCCGAAAACGTTCTCTAGGCGGGACCATATGCTCCAACATGTCAAATTGCATACCGTGTTAAAAGAGCACGAGTGCGAGGTATGTAGGCGGATGTTTGCTAAAATGGAACAGCTTCAAAAACACAAAGCTGTTAAACATAACATCGGGGAGAAAATAATGAATGAAAAGAAGTACATATGCGAAGTGTGTAAAAAGGGTTTCACGACTGAAAAATATCGTGATGTTCATATGAGAGGCCATACAGGCGATAAGGCATTCCAATGTAAAACTTGTATGaagaaatttaattcaaaatcacATCTAACCGAACATGTTAAATTCCATAACGAATGTTCGAAAAAATTCTTGTGTTCAGAATGCGGCCAGCGATTTATTAGAAATGATTATCTTGTTATTCATATGCGACGGCACCGTGGTGAGAAGCcattcaaatgtaaatattgcgGTAAAGgtTTTCCTCGTACAACTGATCTTACGGTACATGAAAGATACCACACAGGAGAAAAAACACATTTATGTATGGTTTGTGGCAGAGGATTTGGAAGGGCTTACAACTTGACAGTTCACATGAGAACACATACGGGTGAAAAACCTTACCAATGCACGTATTGCGATGCGGCTTTCGCACAAGGAAACGACTTGAAGGCTCACGTCCGTCGACATACCGGTGAACGTTATCACTGCGACATGTGTACGGAATCTTTCCTGATGGGCTACTTGTTGACCCAACACAAGCGCACGGTTCACGGCGTCATCGTCCATTCGCATATTCGACGCTTGCAACCTAGTGAAAAAGTCAATCTGCAACCGATCGGACAAACTATACAGTTACCTACACCTTCTGTCACGAGGCCGTCGAATATGCCCATACCAATTCCCGTTATACCGACGCTTGCTTCGATACCATTGACGCTCCCCCAACCGAGTCTGCCCGATAGAGTTGCATAG
- Protein Sequence
- MDNLEYNFERICRACKSESDEMQSVFETNEIAGRPSKLAEMLMACASVQVICGDGLPDSMCVTCVRQLSDAYTFKRKCEGTDNSLRIYLKEKGIKQEGLLPTVNENDLANTILEFNSLYNNGSGGIKTEPSEGLHIIKNEDSVIFSCSICDKRFASLEGLKYHKKRHTGDDLHKCKICSKEYTRLSHLQRHIRQHGPRKVHICKICNKTLTRLEHLKRHMITHVKNKPHTCETCKRGFNRPDHLMNHVKRCKGDRPYVCEICNKGFSREDSLQVHMNSHAHNVDLKPMLESLDDIENHYIEVENYTGCSDFSDFESFDSENESIEQPNLEPQVDIVESDDFHKQLDDDDDDDNDDDNMDDRDDIKAEFDMDDVDLKPPTPEVPVKRKRGRPRKGEVRPPKPIKMKKNRKEHIEFRASPNAAGKYPCDHCDKVLSTLIGLEIHMRKHTGLKLFSCSVCSKKFTRSNHLKRHLSIHDENKPYTCDICPKTFSRRDHMLQHVKLHTVLKEHECEVCRRMFAKMEQLQKHKAVKHNIGEKIMNEKKYICEVCKKGFTTEKYRDVHMRGHTGDKAFQCKTCMKKFNSKSHLTEHVKFHNECSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCMVCGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERYHCDMCTESFLMGYLLTQHKRTVHGVIVHSHIRRLQPSEKVNLQPIGQTIQLPTPSVTRPSNMPIPIPVIPTLASIPLTLPQPSLPDRVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511053;
- 90% Identity
- iTF_01511053;
- 80% Identity
- -