Vnig000558.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000001.1:16015419-16021075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0001 0.0027 18.6 1.4 1 23 145 167 145 167 0.98 2 16 1.5e-05 0.00042 21.2 6.2 1 23 173 195 173 195 0.98 3 16 2.2e-05 0.00061 20.7 4.5 1 23 201 223 201 223 0.97 4 16 0.00048 0.013 16.5 1.7 1 21 229 249 229 250 0.94 5 16 4.1e-07 1.1e-05 26.1 0.2 1 23 257 279 257 279 0.98 6 16 2.7e-05 0.00074 20.4 0.3 1 23 423 445 423 445 0.98 7 16 2.1e-05 0.00057 20.7 4.6 1 23 451 473 451 473 0.97 8 16 1e-05 0.00028 21.7 2.1 1 23 479 501 479 501 0.98 9 16 0.0064 0.18 12.9 1.0 1 23 507 530 507 530 0.94 10 16 0.0025 0.067 14.2 0.5 1 23 542 564 542 564 0.97 11 16 0.0049 0.14 13.3 6.0 1 23 570 592 570 592 0.97 12 16 5.8e-06 0.00016 22.5 0.5 1 23 599 621 599 621 0.96 13 16 7.5e-06 0.00021 22.1 1.2 1 23 627 649 627 649 0.98 14 16 8.2e-06 0.00023 22.0 0.7 3 23 657 677 655 677 0.96 15 16 5.4e-05 0.0015 19.4 0.1 1 23 683 705 683 705 0.99 16 16 0.65 18 6.6 1.9 1 23 710 733 710 733 0.97
Sequence Information
- Coding Sequence
- ATGGATAATCTTGAATATAATTTTGAGCGCATTTGTCGCGCCTGTAAATCGGAATCTGATGAAATGCAGTCTGTTttcgaaacaaatgaaatagcTGGACGACCTTCTAAGCTTGCCGAAATGCTCATGGCTTGTGCTTCAGTACAGGTCATATGCGGCGACGGCCTCCCGGATTCAATGTGCGTTACTTGTGTGCGTCAACTCAGCGACGCTTACACGTTTAAAAGAAAATGCGAAGGCACCGACAATAGTTTACGAATTTATCTCAAGGAAAAAGGCATTAAACAAGAAGGACTGCTGCCCACTGTCAATGAGAATGACTTAGCGAACACAATCTTAGAATTTAATTCTTTGTACAATAATGGCAGCGGCGGTATAAAAACAGAGCCGTCTGAAGGACTGCACATCATTAAAAACGAAGATTCTGTGATTTTTTCGTGTAGTATTTGCGATAAAAGATTCGCGTCTCTGGAAGGTTTGAAATATCATAAGAAACGCCACACCGGAGACGATTTACACAAGTGCAAAATCTGTTCGAAAGAATACACTCGATTGAGTCATTTACAAAGACATATTCGACAGCACGGCCCCAGAAAAGTACACATCTGtaaaatttgcaataaaacGCTTACGAGACTGGAACACTTAAAACGCCACATGATAACTCACGTAAAAAACAAACCTCATACTTGCGAGACCTGCAAAAGAGGCTTCAATAGACCGGACCACTTGATGAATCACGTGAAGCGATGTAAAGGCGATCGGCCGTATGTTTGCGAAATATGTAACAAGGGCTTCAGTCGCGAAGACAGTTTGCAAGTGCACATGAACTCCCACGCCAACAACGTCGATCTAAAACCTATGCTAGAATCGCTCGACGATATAGAAAACCATTACATCGAAGTCGAAAATTACACCGGCTGTTCGGATTTTTCCGATTTCGAATCGTTCGACTCCGAAAACGAGTCCGTAGAACAGCCTAACTTAGAACCGCAAGTGGACATAGTCGAGTCGGACGATTTCCACAAACAGTtggacgacgacgacgacgacgaggATGACGATAATATGGACGACAGAGACGACATCAAACCAGAATTCGATATCGACGACGTCGATTTAAAACCGCCCACTCCGGAAGTGCCGATCAAACGCAAACGGGGCCGGCCTAGAAAAGGTGAGGTTCGGCCACCGAAACCcattaaaatgaagaaaaatcgaAAGGAGCACATCGAATTCAGGGCGTCCCCGAACGCGGCTGGGAAATATCCGTGCGACCATTGCGATAAAGTATTATCGACTTTGATCGGTTTGGAGATTCATATGCGCAAACATACGGGATTGAAGTTGTTCTCTTGCAGCGTGTGCAGTAAGAAATTCACGCGTTCCAATCATTTGAAACGACATCTTTCCATTCACGACGAAAACAAACCTTATACGTGCGACATTTGTCCGAAGACGTTCTCGAGGCGGGACCACATGCTCCAGCACGTGAAATTGCATACCGTGTTAAAGGAGCACGAGTGCGAGGTGTGCCGACGCATGTTTGCCAAAATAGAACAGCTTCAGAAACACAAGGCCGTCAAACACAACATCGGAGAGAAAATCATGAATGAAAAGAAGTACATATGCGAGGTGTGTAAAAAGGGCTTCACGACTGAAAAATATCGCGACGTTCATATGAGAGGACATACGGGCGATAAAGCATTCCAATGTAAAACTTGTATGAAGAAATTTAATTCGAAATCGCATCTTACCGAACATGTTAAGTTCCATAATGAATGTTCGAAAAAATTCTTGTGTTCGGAATGCGGCCAGCGATTTATTAGAAACGATTATCTTGTCATTCATATGCGAAGACATCGCGGCGAGAAGCCATTCAAGTGTAAATATTGTGGAAAAGGTTTTCCTCGTACGACGGATCTTACAGTACATGAAAGATACCACACGGGAGAAAAAACACATTTGTGCATGGTTTGTGGCAGAGGGTTTGGAAGGGCTTACAACTTGACGGTTCACATGAGAACACATACGggcgagaaaccgtatcaatgtacGTATTGCGACGCAGCCTTCGCCCAAGGAAACGACTTGAAGGCTCACGTCCGTCGACATACCGGCGAACGCTATCACTGCGACATGTGTACGGAATCTTTCCTGATGGGCTACCTGTTGACCCAACACAAACGCACGGTTCACGGCGTCATCGTCCATTCGCATATCCGACGCTTGCAGCCCAGTGAAAAAGTCAATCTGCAACCGATCGGACAAACCATACAGTTACCTACGCCGTCTGTCACGAGGCCTTCAAACATGCCCATACCTATTCCCGTCATACCGACGCTCGCTTCTATACCGTTAACGCTCCCCCAACCGAGTCTGCCCGATAGAGTTGCATAG
- Protein Sequence
- MDNLEYNFERICRACKSESDEMQSVFETNEIAGRPSKLAEMLMACASVQVICGDGLPDSMCVTCVRQLSDAYTFKRKCEGTDNSLRIYLKEKGIKQEGLLPTVNENDLANTILEFNSLYNNGSGGIKTEPSEGLHIIKNEDSVIFSCSICDKRFASLEGLKYHKKRHTGDDLHKCKICSKEYTRLSHLQRHIRQHGPRKVHICKICNKTLTRLEHLKRHMITHVKNKPHTCETCKRGFNRPDHLMNHVKRCKGDRPYVCEICNKGFSREDSLQVHMNSHANNVDLKPMLESLDDIENHYIEVENYTGCSDFSDFESFDSENESVEQPNLEPQVDIVESDDFHKQLDDDDDDEDDDNMDDRDDIKPEFDIDDVDLKPPTPEVPIKRKRGRPRKGEVRPPKPIKMKKNRKEHIEFRASPNAAGKYPCDHCDKVLSTLIGLEIHMRKHTGLKLFSCSVCSKKFTRSNHLKRHLSIHDENKPYTCDICPKTFSRRDHMLQHVKLHTVLKEHECEVCRRMFAKIEQLQKHKAVKHNIGEKIMNEKKYICEVCKKGFTTEKYRDVHMRGHTGDKAFQCKTCMKKFNSKSHLTEHVKFHNECSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCMVCGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERYHCDMCTESFLMGYLLTQHKRTVHGVIVHSHIRRLQPSEKVNLQPIGQTIQLPTPSVTRPSNMPIPIPVIPTLASIPLTLPQPSLPDRVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530552;
- 90% Identity
- iTF_01530552;
- 80% Identity
- -