Basic Information

Insect: Xanthorhoe spadicearia
Gene Symbol: PRDM7
Assembly: GCA_947086425.1
Location: OX352201.1:1614925-1618882[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.24 5.1e+03 -2.1 0.1 7 18 287 298 283 303 0.77

2 11 0.092 1.9e+03 -0.7 0.0 25 44 391 410 386 414 0.81

3 11 5.2e-05 1.1 9.7 0.0 21 44 415 438 407 442 0.89

4 11 0.022 4.6e+02 1.3 0.1 21 44 443 466 439 470 0.82

5 11 0.0013 27 5.2 0.1 21 46 471 496 465 503 0.85

6 11 0.0062 1.3e+02 3.0 0.0 21 45 499 523 494 530 0.82

7 11 0.0014 29 5.1 0.0 21 45 527 551 521 558 0.85

8 11 0.0021 43 4.5 0.0 21 47 555 581 551 588 0.85

9 11 0.0025 53 4.3 0.0 21 46 583 608 579 614 0.86

10 11 0.0025 53 4.3 0.0 21 46 611 636 607 642 0.86

11 11 0.00017 3.5 8.0 0.2 21 46 639 664 635 666 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.24	5.1e+03	-2.1	0.1	7	18	287	298	283	303	0.77
2	11	0.092	1.9e+03	-0.7	0.0	25	44	391	410	386	414	0.81
3	11	5.2e-05	1.1	9.7	0.0	21	44	415	438	407	442	0.89
4	11	0.022	4.6e+02	1.3	0.1	21	44	443	466	439	470	0.82
5	11	0.0013	27	5.2	0.1	21	46	471	496	465	503	0.85
6	11	0.0062	1.3e+02	3.0	0.0	21	45	499	523	494	530	0.82
7	11	0.0014	29	5.1	0.0	21	45	527	551	521	558	0.85
8	11	0.0021	43	4.5	0.0	21	47	555	581	551	588	0.85
9	11	0.0025	53	4.3	0.0	21	46	583	608	579	614	0.86
10	11	0.0025	53	4.3	0.0	21	46	611	636	607	642	0.86
11	11	0.00017	3.5	8.0	0.2	21	46	639	664	635	666	0.86

Sequence Information

Coding Sequence: ATGGCACAACGTAATCTGCGGCAAAAGCCGCGAATATGCTACTACGAGCCAGAAGAACCAGCTTTAGACGAGTATGTTTTTTGTGAAAAATGCGGAGACTACGTTTATGAATACTGTTCTTTACATGGACCCCTGCTGGTAATACCGGATGACAAGGTTCCTGCCAAGCCTAATGTTCCATCCTACGTTCCTCGCGCAGCACTCACCATTCCTCACGTGTTCCTGCATATCACCTACTCCATTATACCAGGTGCCGGTCTGGGCGTATTTTCATCAATGACCCTCCCGTCTGGAGTCCGTTTCGGCCCCTACAGAGGGCAACGCACTAATGTCATCGATTCATCATACTGCTGGCAGATATACGATAATAACAGAAAGCCAGTGCATTGTATTGACGCTGCGGACGCTAACAAGTCCAACTGGATGCGCTACGTCAACTGCGCTCGGCACTCGAGAGAACAGAATCTCGTCGCTTACCAGTACCAAGGGGAACTTTATTACAGAACAATCAAAATAATTCCTCGGTTCACGGAGCTTATGGTATTCTACGGCAGTGAGTTCGCTTGTGAATTAGACGTCGATCTCGGCAAATACAACTCCCCTGCTGGGTACGCGCAGAAATTTGGTGCACCCGTCGCTAAGAAACTTAAATCGAGTGAAAATAGCACAATAACTGAGGATTCTAAAACATCGAACGCCATAGAGAAAACTGCTACCAGCGAACCGACAAGAGATCAAGTTACTGAACTCGATTCTATTACAACGGATGTAGCAAGTGACAACATAGGAAGTCAAGTTAACCTTCCAAGTGCAGGTCAAGCAGAATCTACAAGCAATTGTTTAAGTATTAAAGATGTCACTAAACCAAACAAAACAAAAAAACCTAGAGCAAGTGCAACTACAAAATATGCAAAATCAAAGGAAAGCGTTACAAAAAGCATAAAAGCAAAAACTGCTCAAATTAATAAAAATGCACCGAAACTCAGCACTGTAAATATTGAAACACAAGAATATTTAAACAAAAATAAAACTAAGGAAGTAAAAACGAGTACTGAACCCAAAAACGCTTGCATAAAGGATTTGTACATCTATtgtgatgattgcaaaaagagatgcgtctcaaaacaagaactactgaaacatcttaggttccatgatggcaatagagcttttacatgtgaaatatgcaataaggctttcactaaaaatgctgaattaaaaatacatatgagaacgcacactggagaaaaaccgtatgcctgtgaaatatgcaataaggctttcactcaaagtagtgatttaaaaaaacatataagaacgcacactggagaaaggccgtatgcctgtgaaatatgtaagaaggctttcactgatagttctcatttcaaattacatatgagaacgcacactggagaaaagccgtatgcctgtgaaatatgcaataaggctttcactcaaactagtcatttcaaaaaacatatgagaacgcacactggagaaaagccgtatgcctgtgaaatatgcaataaggctttcactcaaactagtcatttcaaattacatatgagaacgcacactggagaaaagccgtatgcctgtgaaatatgcaataaggctttcactcaaactagtcatttcaaaaaacatatgagaacgcacactggagaaaagccgtatgcctgtgaaatatgcaataaggctttcactacaagtagttatttaaaaatacatttgacaacgcacactggagaaaagccgtatgcctgtgaaatatgtaataaggctttcactacaagtagttatttaaaaatacatttgacaacgcacactggagaaaagccgtatgcctgtgaaatatgtaataaggctttcactacaagtagttatttaaaaatacatttgacaacgcacactggagaaaagccgtatgcctgtgaaatatgcaatagggctttcactattagaacaagtttaaaaagacaccttgaaatacacttgagataa
Protein Sequence: MAQRNLRQKPRICYYEPEEPALDEYVFCEKCGDYVYEYCSLHGPLLVIPDDKVPAKPNVPSYVPRAALTIPHVFLHITYSIIPGAGLGVFSSMTLPSGVRFGPYRGQRTNVIDSSYCWQIYDNNRKPVHCIDAADANKSNWMRYVNCARHSREQNLVAYQYQGELYYRTIKIIPRFTELMVFYGSEFACELDVDLGKYNSPAGYAQKFGAPVAKKLKSSENSTITEDSKTSNAIEKTATSEPTRDQVTELDSITTDVASDNIGSQVNLPSAGQAESTSNCLSIKDVTKPNKTKKPRASATTKYAKSKESVTKSIKAKTAQINKNAPKLSTVNIETQEYLNKNKTKEVKTSTEPKNACIKDLYIYCDDCKKRCVSKQELLKHLRFHDGNRAFTCEICNKAFTKNAELKIHMRTHTGEKPYACEICNKAFTQSSDLKKHIRTHTGERPYACEICKKAFTDSSHFKLHMRTHTGEKPYACEICNKAFTQTSHFKKHMRTHTGEKPYACEICNKAFTQTSHFKLHMRTHTGEKPYACEICNKAFTQTSHFKKHMRTHTGEKPYACEICNKAFTTSSYLKIHLTTHTGEKPYACEICNKAFTTSSYLKIHLTTHTGEKPYACEICNKAFTTSSYLKIHLTTHTGEKPYACEICNRAFTIRTSLKRHLEIHLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01528536;
90% Identity: iTF_01529385;
80% Identity: iTF_01529385;