Xspa001466.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352223.1:308891-313569[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0015 0.083 13.6 5.5 1 23 121 143 121 143 0.98 2 19 0.00028 0.016 15.8 0.5 2 23 168 190 167 190 0.95 3 19 0.11 6 7.7 0.8 3 23 241 261 240 261 0.90 4 19 2.1 1.2e+02 3.7 4.0 2 23 267 288 266 288 0.93 5 19 0.0037 0.21 12.3 0.6 1 23 292 315 292 315 0.97 6 19 0.0029 0.17 12.6 1.6 2 23 322 344 321 344 0.95 7 19 0.0016 0.091 13.5 0.3 1 19 391 409 391 414 0.89 8 19 0.062 3.6 8.5 0.4 2 23 441 463 441 463 0.97 9 19 0.16 9.3 7.2 1.0 2 23 486 508 485 508 0.91 10 19 0.046 2.6 8.9 0.3 2 21 513 532 512 533 0.95 11 19 0.032 1.8 9.4 1.7 2 23 632 654 631 654 0.89 12 19 2.7 1.6e+02 3.3 1.1 2 23 677 699 676 699 0.90 13 19 0.00031 0.018 15.7 0.1 1 23 706 729 706 729 0.95 14 19 0.00076 0.043 14.5 2.0 2 23 735 757 734 757 0.97 15 19 0.0033 0.19 12.5 0.1 2 23 763 785 762 785 0.95 16 19 0.0071 0.41 11.4 0.9 1 23 792 815 792 815 0.96 17 19 0.041 2.3 9.0 0.8 3 23 823 843 821 843 0.93 18 19 4.5e-05 0.0026 18.3 2.8 1 23 849 871 849 871 0.99 19 19 1.2e-05 0.00069 20.1 1.3 3 23 879 899 877 900 0.95
Sequence Information
- Coding Sequence
- ATGATGTTTAAAAAGAGGTACCTAGTAGAACTGCAATATTACGAGGCCTCAGAATCATCATATAACGGAGAGTGGTCTCAGTCGGTACTCGAGTGCCAGCAAGAATTACTTTCCGAACTAACTGATTACGAAGACTTGCCCATTGAGTACATAGCAGATGTGTTTACCGAAACAACTGAAAATGAAACTGAGCACACACAAGATTTGCTCACGGAATCTGCACATGATATACTTGAGTCCAGACACTCCGATGAAGCAAGTGAAGCTATACCATCGGAGAAACTTAAGAAATTGAGAATTAATGTCAGGAATGTGGTACAGGCATCATCAGTGACACCATTTAGATGGCTCGTGTCCGCGTACCGTTGTTTCTATTGCTACGAAGTATTCCACCATCAGGACGAGCTCAAATCCCATCAAATGCTGCACGATGATACAGAAATCGTTAATGCTATGAACAAATTTTGGGATTCATCTATTTACGTCGACGTATCGGTTCTTAAATGCAAACTGTGCTCCAAAAATTTTAATACATTAGATAGTTTGATAGATCATTTGATTGTGAAGCATAAGTTGGTTTATAATAAGGATGTGAAATGCTTTCAAGCTTTCAAATTAGGCGAGAAAGTCTCCTGCGTTATTTGTAACATGAAGTTTATGGATTTTGTGAAACTGCTCTTTCATACAGCTTCAGAGCATCAGCGCAGTGAGGATAAGCTATGCGATGTCTGTGGGAGGACTTTTAAACCGCATCAAATCAAGATGCACCTCGCCAACGAGCATAGAAGCAAAACTGTGAAGTGCACGCATTGCAACCTCAACTTCAGCGTGCACACAATTAGGACGCATATGACACGTGTGCACAATAAACTCTTCAAATGTCAGATGTGTACAGAGACTTTTGAGACTGCGTACAAGCGCGCGGCGCATCTCACGACCGTACATAAACGGAGAGAGCCAGTCCAATGTCCACATTGTCCCAACACCTACTATTTCCAGAGCACGATGAGGAGGCATGTTAAGCAGGTCCATGTTAAGGAGAAGAACGTGGCTTGCGATCAGTGCGAGTGGAAAGAGACCGCGTTGAGGACGGAAGAACAGCTAGCGGGGTTGCTCATAACTATCATTCAGCACACGACAATCTTGCCCTTTCGTTGGCAAAGCGGGAAATTCATGTGCTCTTACTGCCCCCAGCGTTTCGACACAAGCGCGGCTCTCAAAGAGCACGACCGAAACGGACACGCCGAGATAAATATCACAGATATAGTCACGCAAACTATGAACAGAGACCGTAGAATCAAACTTGACGTAGCAGACGCTAAATGCCATCAATGCGATGAGGAAATAGACGACCTACCCGACTTAGTAGACCATTTGAGGAAAAAACATGGGGAGGAGTTTGATGATAGTATTGCAGATTATTTTGTATCATACAGGCTATACGATACCGAAATTAGCTGCGTGGAATGTGGCATGTCCTTCCAGTACTTTATACAATTGCTAACGCATACACACCAAACGCACATGAAAAAGCAAACGTGTAAAATTTGCGGGCAAGGGGTCGCTGGGAAAACCAATATGTACCATCATATGAAGAATATTTCAGAGATCGAGGACGCCTCATCTCTCGTCAACTCCGTCATGGAGAAGATGACGGAGTTGCAGCGGAAAGAGGATCTAGTGAGTCTCATGTCGACCATTATAGAGAACTCAACAGCGGTGCCGTTCCGCTGGCATTGCAGCAAATTCGCCTGCTTCTTCTGTTGCTATCCCTTCGAGGAGAGCTCCAAACTCAAGGCGCATTACCACGAAGAACACAGCGACGCCAAGATACGCAGCGCGTTCCGAGGCGTCATCAAGAACAGCAAAGTTAAACTGGAGATCTCGAACCTCACGTGCAAGAAGTGCTCGAAATGCTTCAATGTTATAGACGAGCTGCTCGATCACTTTGTGAAGATCCACGGCTTGAAGCTAAACCTCGAGGTGAAGCATCAAGTTTTCGCGTACAAACTAGCAGACGACAGGATGCCGTGCCTACAGTGCGGGGATGAGTTCAGATTCTTCGGAACACTGCTAAAGCACACGCACGCGAAACACAACACAACAAACGAGGCATTCCTCTGCGAGATTTGCGGGCAAGCCTTCGTGACTAAGACCAGCGTGGCCAGTCACGTAAAGACTGTCCACACGAACGACGGCGTCACATGCGACAAATGCAACATATCGTTCAAGAATGTTAACGCGTTGCAGCTTCACCATCGTCGCACGCACAGGACTTACATGCTGAAATGCCCCAAGTGTCCCGAAGTCCTGACAAGCCCGTATCTGCGCAAGCGTCATCTCGCCAAAGTGCACGACGTGAAGCGCTTCCAATACGAGTGCGATCTCTGCAACTTTGTGTTCACGCTCAAAAGCCGCCTTCTCATGCACAAATCTCGGGTGCACATGAAGGAAAGGGCGTTCGGTTGCGAGTTCTGTTCGTACAAAGCGTTCAACAAGGAGAGTCTGACGCGGCACATGGTGTCGCACGACGACACGCGCCCCTTTCAGTGTGAGTTTTGCAAGAAAGCGTTTCAGAGGAAGAAAACCCTGGAACTGCATAGGCGGATACATACTAATGATAGGCGTTATGGGTGTAAGGAGTGCGGGAAAGCGTTTGTGCAGTATACAAGTTTGAAACTGCATTATCGGGTGCACCATTCGAAAGAGGGGCCGACCGCTGAGACGCATGTGACCAGTTACTGGTCGCCGCGGCACTAG
- Protein Sequence
- MMFKKRYLVELQYYEASESSYNGEWSQSVLECQQELLSELTDYEDLPIEYIADVFTETTENETEHTQDLLTESAHDILESRHSDEASEAIPSEKLKKLRINVRNVVQASSVTPFRWLVSAYRCFYCYEVFHHQDELKSHQMLHDDTEIVNAMNKFWDSSIYVDVSVLKCKLCSKNFNTLDSLIDHLIVKHKLVYNKDVKCFQAFKLGEKVSCVICNMKFMDFVKLLFHTASEHQRSEDKLCDVCGRTFKPHQIKMHLANEHRSKTVKCTHCNLNFSVHTIRTHMTRVHNKLFKCQMCTETFETAYKRAAHLTTVHKRREPVQCPHCPNTYYFQSTMRRHVKQVHVKEKNVACDQCEWKETALRTEEQLAGLLITIIQHTTILPFRWQSGKFMCSYCPQRFDTSAALKEHDRNGHAEINITDIVTQTMNRDRRIKLDVADAKCHQCDEEIDDLPDLVDHLRKKHGEEFDDSIADYFVSYRLYDTEISCVECGMSFQYFIQLLTHTHQTHMKKQTCKICGQGVAGKTNMYHHMKNISEIEDASSLVNSVMEKMTELQRKEDLVSLMSTIIENSTAVPFRWHCSKFACFFCCYPFEESSKLKAHYHEEHSDAKIRSAFRGVIKNSKVKLEISNLTCKKCSKCFNVIDELLDHFVKIHGLKLNLEVKHQVFAYKLADDRMPCLQCGDEFRFFGTLLKHTHAKHNTTNEAFLCEICGQAFVTKTSVASHVKTVHTNDGVTCDKCNISFKNVNALQLHHRRTHRTYMLKCPKCPEVLTSPYLRKRHLAKVHDVKRFQYECDLCNFVFTLKSRLLMHKSRVHMKERAFGCEFCSYKAFNKESLTRHMVSHDDTRPFQCEFCKKAFQRKKTLELHRRIHTNDRRYGCKECGKAFVQYTSLKLHYRVHHSKEGPTAETHVTSYWSPRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661697;
- 90% Identity
- -
- 80% Identity
- -