Ealt022118.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751402.1:1892608-1904376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.035 2.3 9.4 4.4 1 23 130 152 130 152 0.98 2 18 0.0025 0.17 13.0 0.4 2 23 177 199 176 199 0.94 3 18 0.098 6.6 8.0 0.4 2 23 220 242 219 242 0.93 4 18 0.046 3.1 9.0 1.0 3 23 250 270 249 270 0.92 5 18 7.3 4.9e+02 2.1 3.3 2 23 276 297 275 297 0.85 6 18 0.13 8.5 7.6 0.5 2 23 302 324 301 324 0.95 7 18 0.005 0.34 12.0 0.7 2 23 331 353 330 353 0.95 8 18 0.17 12 7.2 2.2 1 19 403 421 403 421 0.97 9 18 2.8 1.9e+02 3.4 2.5 3 23 499 520 497 520 0.91 10 18 0.035 2.4 9.4 1.7 2 23 631 653 630 653 0.89 11 18 3 2e+02 3.3 1.1 2 23 676 698 675 698 0.90 12 18 0.00034 0.023 15.7 0.1 1 23 705 728 705 728 0.95 13 18 0.0011 0.072 14.2 1.9 2 23 734 756 733 756 0.96 14 18 0.0036 0.24 12.5 0.1 2 23 762 784 761 784 0.95 15 18 0.0078 0.53 11.4 0.9 1 23 791 814 791 814 0.96 16 18 0.045 3 9.0 0.8 3 23 822 842 820 842 0.93 17 18 5e-05 0.0033 18.4 2.8 1 23 848 870 848 870 0.99 18 18 1.3e-05 0.00089 20.1 1.3 3 23 878 898 876 899 0.95
Sequence Information
- Coding Sequence
- ATGACTGAACTGCAATATTACGAGGCATCTGTATCGGCTGATTATGAAGGAGAGTTGACAGAGTCGACAGTATACACGCGAGAATTACTCACAGATTCAGAGTGCAAGGAAGATATACTTTCTGAGTCGACTGGATACGAGCAAAATCCTATTGAGTATATTGTTGAAACGCTCACAGAATCAACTGAGAAAGATACTGAGCACACACAAGATATGCTCAAGGAATCTGCTCAAGAGATACTTGAGTCACTAGAGGATAGAGATAATTCAGATTTAGAAGAAACAAGTAAAGTAACGCCGTCGGAAAATTTGGAGAAATTGAGAATAAATGTGAGGAACGTTGTGCAAGCGTCATCGGTTATGCCATTTCGGTGGTTAGTGTCAGCGTATCGATGTTTTTACTGCTACGATGTTTTCCACCATCCAGACGAGCTCAAATCACATCAAATGCTCCACGATGATACAGAGATCGTGAATGCTATGAACAAATTTTGGGATACGTCTATCTACATCGACATATCAGTCCTAAATTGCAAATTATGTACAAAAACGCTAAGTTCTTTAGACAGTTTGATAAATCATTTGATTGTAAAGCATAAAATACGTTACAATAAAGACATCGTCTGTTTCCAAGCTTTTAAATTAGGCAAAAGGGTCTCTTGCGTAACATGTAATATGAAATTTAGCGATTTTGTTAAACTACTCGTTCATACAACTTCGGAGCATCAACGCAGCGAAGATAAACTATGCGATGTCTGCGGAAGAACTTTTAAACCACACCAGATGAAAATGCACCTTGCTAATGAACATAGAATCAAAACTGTCAAATGCACACATTGTAATCTAAACTTTAACGTGCACACAATAAGGACGCATAAGATACGAGCACACAACAAGCTCTTGAAATGCCAAATGTGTACGGAGACTTTTGAGACGGTTTACAAACGCGCTGTGCATCTCACAACTGTTCATAAAGGAAGAGAAACTGTGAAATGTCCACAATGTCCCAACACCTATTATTTTCAAAGCACGATGCGAAGGCATGTTAAACAGGTCCATGTTAAGGAAAAGAATGTCGCCTGCGATCTGTGCGATTGGACAGAGATTACATCGATTACATTGAAGATGGAAGGGCAACTATCGAGGTTGCTTGTAGCTATCATTCAGAACACAACAATATTACCTTTTCGCTGGCAGAAAGGAAAGTTCATGTGCTTTTACTGTCCCCTATATTTCAAGACCTGCACCGCTTTAAAAATCCATGATGACAACGGACACGCTGATATAAAAGTAACAGATATAGTCACGCAAACATTGAGCAACCATCGCAGATTCAAACTTGACGTGAGCGACGCGAAATGCCGTCTATGCGACCACGATATCATAGACTTGCCCGACTACGTCAAACATTTGTGCGAGAAACACGACGAAGATTTCGATTCTAGTATCTCTGAGTATTTTATGTCGTTCCGACTTTCGGATAACGAAATGCACTGCGTGGAATGCAACTTGTGCTTTCAATATTTCAATCTGTTGCTTCTACACACAAATGAAGCTCATATGCGGAAAGAAACATGCGAGATTTGCGGGCATGGGGTAGTGGAAATCGAGGACGCTTCTTCTCTGGTCAACTCAGTCATGGAGAAGATGACTGAGCTGCAACGCAAGGAGGACCTAGTAAGTCTCATGTCGACCATCATAGAGAATTCCACAGCAGTTCCGTTCCGTTGGCACTGCAGCAAATTCGCCTGTTTCTTCTGCTGCTACCCTTTTGAAGAGAGCTCGAAACTGAAAGCACATTACCACGAAGAGCACAGCGATGCGAAGATACGCAGCGCTTTCCGCGGTGTCATCAAAAACAGCAAAGTTAAACTTGAAATATCGAACTTAACCTGCAAGAAATGCTCAAAATGCTTCAACGTTATCGACGAACTGCTAGACCACTTCGTAAAGATCCACGGGTTGAAGTTGAACCTCGATGTGAAGCATCAAATCTTCGCTTACAAACTCGCTGATGACAGAATGCCGTGTCTGCAATGCGGAGATGAATTCAGATTCTTTGGAACCCTACTCAAACACACTCACGCGAAACATAATACAACAAACGAAGCGTTCTTATGCGAGATTTGCGGACAAGCGTTCGTTACGAAGACGAGCGTGGCCAGCCACGTTAAAACAGTCCACACGAATGACGGCGTTTCGTGTGACAAATGCAATATCTCCTTCAAAAACGTCAACGCATTGCAGCTACACCACCGTCGCACACACAGAACTTATATGCTTAAATGCCCGAAGTGCCCTGAAGTCCTAACGAGTCCGTATCTCCGCAAACGGCATCTAGCTAAAGTCCACGACGTAAAGCGCTTCCAATATGAATGCGACCTCTGCAACTTCGTGTTTACATTGAAAAGCCGTCTCCTAATGCACAAATCGAGAGTTCATATGAAGGAAAGAGCGTTCGGCTGCGAGTTCTGCTCGTACAAAGCGTTCAACAAGGAGAGTTTGACGCGTCACATGGTATCGCATGACGACACCCGCCCGTTTCAGTGTGAGTTTTGCAAGAAAGCGTTTCAGAGGAAGAAAACTTTGGAACTGCATAGGCGGATACATACAAATGATAGGCGGTATGGGTGTAAGGAATGCGGGAAGGCATTCGTGCAGTATACGAGCTTGAAACTGCATTATAGAGTACACCATTCGaaagaggggccgactactgaaGCGCACGTGGCCAGTTATTGGTCTCCTAGGCACTAG
- Protein Sequence
- MTELQYYEASVSADYEGELTESTVYTRELLTDSECKEDILSESTGYEQNPIEYIVETLTESTEKDTEHTQDMLKESAQEILESLEDRDNSDLEETSKVTPSENLEKLRINVRNVVQASSVMPFRWLVSAYRCFYCYDVFHHPDELKSHQMLHDDTEIVNAMNKFWDTSIYIDISVLNCKLCTKTLSSLDSLINHLIVKHKIRYNKDIVCFQAFKLGKRVSCVTCNMKFSDFVKLLVHTTSEHQRSEDKLCDVCGRTFKPHQMKMHLANEHRIKTVKCTHCNLNFNVHTIRTHKIRAHNKLLKCQMCTETFETVYKRAVHLTTVHKGRETVKCPQCPNTYYFQSTMRRHVKQVHVKEKNVACDLCDWTEITSITLKMEGQLSRLLVAIIQNTTILPFRWQKGKFMCFYCPLYFKTCTALKIHDDNGHADIKVTDIVTQTLSNHRRFKLDVSDAKCRLCDHDIIDLPDYVKHLCEKHDEDFDSSISEYFMSFRLSDNEMHCVECNLCFQYFNLLLLHTNEAHMRKETCEICGHGVVEIEDASSLVNSVMEKMTELQRKEDLVSLMSTIIENSTAVPFRWHCSKFACFFCCYPFEESSKLKAHYHEEHSDAKIRSAFRGVIKNSKVKLEISNLTCKKCSKCFNVIDELLDHFVKIHGLKLNLDVKHQIFAYKLADDRMPCLQCGDEFRFFGTLLKHTHAKHNTTNEAFLCEICGQAFVTKTSVASHVKTVHTNDGVSCDKCNISFKNVNALQLHHRRTHRTYMLKCPKCPEVLTSPYLRKRHLAKVHDVKRFQYECDLCNFVFTLKSRLLMHKSRVHMKERAFGCEFCSYKAFNKESLTRHMVSHDDTRPFQCEFCKKAFQRKKTLELHRRIHTNDRRYGCKECGKAFVQYTSLKLHYRVHHSKEGPTTEAHVASYWSPRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01529433;
- 90% Identity
- -
- 80% Identity
- -