Basic Information

Insect: Xanthorhoe spadicearia
Gene Symbol: -
Assembly: GCA_947086425.1
Location: OX352222.1:3529771-3531357[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5e-07 2.9e-05 24.5 1.3 2 23 87 109 86 109 0.95

2 15 0.00074 0.042 14.5 3.7 2 23 115 137 114 137 0.94

3 15 0.00054 0.031 15.0 1.0 2 23 144 166 143 166 0.92

4 15 1.9e-05 0.0011 19.6 1.2 2 23 174 196 174 196 0.96

5 15 4.8e-05 0.0027 18.3 0.1 2 23 203 225 202 225 0.95

6 15 0.07 4 8.3 2.6 1 23 232 255 232 255 0.96

7 15 0.0003 0.017 15.7 3.3 2 23 262 284 262 284 0.95

8 15 0.00018 0.01 16.5 1.7 1 23 297 320 297 320 0.97

9 15 3.8e-06 0.00022 21.7 0.6 3 23 330 351 328 351 0.94

10 15 0.00011 0.0061 17.2 1.4 2 23 357 379 357 379 0.97

11 15 0.0054 0.31 11.8 4.7 2 23 387 409 386 409 0.94

12 15 4.5e-06 0.00026 21.5 3.6 1 23 414 436 414 436 0.98

13 15 0.0006 0.034 14.8 1.0 1 23 442 465 442 465 0.96

14 15 6.7 3.8e+02 2.1 0.3 8 21 472 485 469 486 0.85

15 15 0.029 1.7 9.5 0.2 2 20 493 511 492 513 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5e-07	2.9e-05	24.5	1.3	2	23	87	109	86	109	0.95
2	15	0.00074	0.042	14.5	3.7	2	23	115	137	114	137	0.94
3	15	0.00054	0.031	15.0	1.0	2	23	144	166	143	166	0.92
4	15	1.9e-05	0.0011	19.6	1.2	2	23	174	196	174	196	0.96
5	15	4.8e-05	0.0027	18.3	0.1	2	23	203	225	202	225	0.95
6	15	0.07	4	8.3	2.6	1	23	232	255	232	255	0.96
7	15	0.0003	0.017	15.7	3.3	2	23	262	284	262	284	0.95
8	15	0.00018	0.01	16.5	1.7	1	23	297	320	297	320	0.97
9	15	3.8e-06	0.00022	21.7	0.6	3	23	330	351	328	351	0.94
10	15	0.00011	0.0061	17.2	1.4	2	23	357	379	357	379	0.97
11	15	0.0054	0.31	11.8	4.7	2	23	387	409	386	409	0.94
12	15	4.5e-06	0.00026	21.5	3.6	1	23	414	436	414	436	0.98
13	15	0.0006	0.034	14.8	1.0	1	23	442	465	442	465	0.96
14	15	6.7	3.8e+02	2.1	0.3	8	21	472	485	469	486	0.85
15	15	0.029	1.7	9.5	0.2	2	20	493	511	492	513	0.92

Sequence Information

Coding Sequence: ATGGAAGAAGTCTACATAAAATCTGAACATGTTGAAGTAGAAATCAAGGTAGAGGAATTTCCAGAAGGTGATAGCAAACAAGATATAATTACCAAGCCCATTCTCAAAACAAGTGATTATTCTATAAATAATGAAATAAATTTTCAAACAAGCAATACTACTGAATTTATACATGAAGATGATGAAATTCTTGAACCATCGGAACAGAAAATAGAAATCAACGGAAAGGTGTATGAGAACGGCAAAATAAACCGGCTATCATGCAGCCAGTGTGATAAAACATTCAAAAACCGAGCCAACTTAAGAAACCACATAAAATATGTACATGGTAATCATAGCGTTGAATGCACGCAATGTTTCCGAACATTTAAGTCACACGGCCACCTCCGATCTCATTTAGATTCTGTCCATGCAGTCAATGAAGAAGTCAGCTGCAATATCTGCGACAAAGTCTTCTTAAACCAGAAAAAACTCAAAAATCACATTTTCTACACCCACCCACAACCAGATGAGCAAGCAACTTGCACTGTGTGTTTTAAGATATACAAATCACAGTACAATCTAAAGATACACATGAAACAAGTACATCCAGACGGACAGTCTGTTTCCTGTCCGTATTGTGACAAGCCATTTAAAGTTGATATGCTACTACAACGGCATATAAAATGGAGCCATCCGGACGATGGAATGGTTTACAAATGTCAGCAATGCTTCAAAATCCTTCCATCCCTCGCTTGCTACAAGAAACATATAGAAAACACACATGATATCAACTCCCGAGCTACCTGCCAACTTTGCAAACGGACCTTTAAAACTAAGAAGTCTCTTGATCGTCACGTTAAAAACTTGCACACTGGTCAGGATACCAAACCTTACACACCTAGTAAATTCACCTGCACATTCTGCGAAAGAGGGTTTGAGACTAACACAACATTATTCTGGCATATTCAGAAGTATCACAGTGATTCTGCTCCAGAGGCAACTCACTGTGAAATATGTGATAAATCTTACTCTGACAATGCATCGCTACAACGGCACCTAGCATCTGTACACTCTTTAGAAACCGCTACCTGCCATATATGCATGAAAGAGTTTAAATCTGCTATCAATCTCCAAAGTCATATTAGAATAACCCACGCACCGCCTGAAGCAACCCAAACATGCCATATTTGTGACAAAACCTTCAAATGTCCACTTCATTTACGAATGCATATAAACGCAGTTCACACTATTGGAGAATTTACCTGTGATTTATGCAACAAGACGTTTACATCAGCGAAATATCTCAGCAAACATAAAAAAACACACATAGATGCACGCGAGCACCCTTGTGATTTATGCGGTAAGATGTTTAAGAGTGTGTTTGCCGCGAATAAACACAGAAGAAACGTACACGGTGGAGTTAAGTGCTGCTTCTGCTTTATCAAACAAGGAAAGTTAGAAGAGCATATGCTTAAGTGCCCTAAACGAATAGACCAGTGCGTGAAATGTGGGAAAAGGATTGACAGTAATACTGAGTTATATAGACACTTCTTAAGTTGTGGAGTTGTGGGTAGCCCTATCAAGATTGAGAATGAAGACGATTGA
Protein Sequence: MEEVYIKSEHVEVEIKVEEFPEGDSKQDIITKPILKTSDYSINNEINFQTSNTTEFIHEDDEILEPSEQKIEINGKVYENGKINRLSCSQCDKTFKNRANLRNHIKYVHGNHSVECTQCFRTFKSHGHLRSHLDSVHAVNEEVSCNICDKVFLNQKKLKNHIFYTHPQPDEQATCTVCFKIYKSQYNLKIHMKQVHPDGQSVSCPYCDKPFKVDMLLQRHIKWSHPDDGMVYKCQQCFKILPSLACYKKHIENTHDINSRATCQLCKRTFKTKKSLDRHVKNLHTGQDTKPYTPSKFTCTFCERGFETNTTLFWHIQKYHSDSAPEATHCEICDKSYSDNASLQRHLASVHSLETATCHICMKEFKSAINLQSHIRITHAPPEATQTCHICDKTFKCPLHLRMHINAVHTIGEFTCDLCNKTFTSAKYLSKHKKTHIDAREHPCDLCGKMFKSVFAANKHRRNVHGGVKCCFCFIKQGKLEEHMLKCPKRIDQCVKCGKRIDSNTELYRHFLSCGVVGSPIKIENEDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00267420;
90% Identity: -
80% Identity: -