Cbil000660.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292450.1:6368490-6370073[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.8e-07 3.9e-05 24.5 1.3 2 23 80 102 79 102 0.95 2 14 0.00085 0.058 14.5 3.7 2 23 109 131 108 131 0.94 3 14 0.00049 0.033 15.3 0.8 2 23 138 160 137 160 0.93 4 14 6e-06 0.00041 21.3 0.8 2 23 168 190 167 190 0.96 5 14 2e-05 0.0014 19.6 0.3 2 23 197 219 196 219 0.95 6 14 0.081 5.5 8.3 2.6 1 23 226 249 226 249 0.96 7 14 0.00035 0.024 15.7 3.3 2 23 256 278 256 278 0.95 8 14 0.00045 0.03 15.4 1.0 1 23 291 314 291 314 0.97 9 14 4.3e-06 0.0003 21.7 0.6 3 23 324 345 322 345 0.94 10 14 0.00019 0.013 16.6 0.4 2 23 351 373 351 373 0.97 11 14 0.0092 0.63 11.3 3.3 2 23 381 403 380 403 0.95 12 14 8.1e-07 5.5e-05 24.0 3.1 1 23 408 430 408 430 0.99 13 14 0.00021 0.014 16.4 0.9 1 23 436 459 436 459 0.96 14 14 0.0097 0.66 11.2 0.1 3 20 488 505 486 507 0.90
Sequence Information
- Coding Sequence
- ATGGAAGAAGTTTACATTAAATCTGAACATGTCGAAGTAGAAATCAAAGTAGAGGAAGCATTGGAAGCTACCGAGAGAAAACCAGAGTTAAGCACAAAACTTCAAGCAAGTGATAATTCTCTGAACAGTGGTACTGATATTATACCCGACGATGACAATGAATATCCGGAACCTTCACCTGAACAGAAAATAGAAATCAATGGAAAGGTTTATGAGAACGGCAAGATAAATCGACTATCATGCAGCCAATGCGATAAAACTTTCAAAAACCGAGCCAACTTAAGAAACCACATAAAATATGTTCATTCCGGTAACCATAGTGTGGAATGCACTCAATGTTTCCGAACATTTAAGTCACATGGGCACCTCCGGTCTCATTTAGACTCCGTACATGCTGTAAATGCAGAGGTCAGCTGCAATATTTGCGATAAAGTGTTCTTAAACCagaaaaaactcaaaaatcaTATCTACTACACCCACCCGCAGCCAGAGGATCAGGTAACTTGCACCGTTTGCTTTAAGATATACAAATCTCAGTACAATCTCAAGATACACATGAGACAAGTACACCCAGACGGACAATCTGTCTCCTGTCCTTATTGCGACAAGACTTTTAAAGTTGATATGTTACTCCAACGGCATATAAAATGGAGCCATCCGGACGACGGAATGATCTACAAATGTCAGCAATGCTTTAAGATCCTACCATCCCTCGCTTGCTATAAGAAGCATATTGAAAACACACATGATATCAACTCTCGAGCTACATGTCAACTTTGCAAACGGACTTTTAAGACCAAAAAGTCACTTGATCGTCATGTTAAGAATCTACACAGTGGACAAGATGTCAAACCTTATACTCCTAGTAAATTTATCTGCACGTTTTGTGAAAGGGGGTTTGAGAGTAATACAACTTTGTTCTGGCACATACAGAAGTATCATGTAAGTGATTCAACAGAAGCAACTCATTGTGAAATCTGCGATAAATCTTATTCTGACAATGCGTCACTCCAACGCCATCTGGCATCCGTTCATTCTCTGGAGACAGCGACATGTCAGATTTGCATGAAAGAGTTTAAGTCAGCTATTAATCTGCAAAGTCATATTCGAATTACCCACGCTCCGCCTGAGGCTATCCAGACATGCAATATTTGTGAAAAAACCTTTAAATGCGCTCTTCATCTACGAATGCACATGAATGCAGTTCACACTGTAGGTGAATTCACGTGTGATGTCTGCAACAAATCATTCACATCTGCGAAATATctaaacaaacacaaaaaaacacacaTAGAAACTCGCGAACATCCATGTGACATATGCGGGAAGATGTTTAAGAGTGTATTTGCAGCGAATAAACATAGAAGAAATGTCCACAGTGGAGTTAAATGCTGCTTCTGTCATATCAAACAAGGAAAGTTAGAAGAACACATGCTTAAGTGTCCTAAACGAACAGATGCGTGTGTTAAATGTGGGAAAATGTTTGAAAGTAATGCAGAGTTACACGGACATTTCTTAACTTGTGGGTTTGAAGGTGTTCCTATTAAGATTGAAAATGAAGATGAAGACTTAAGTCTTAGCTAA
- Protein Sequence
- MEEVYIKSEHVEVEIKVEEALEATERKPELSTKLQASDNSLNSGTDIIPDDDNEYPEPSPEQKIEINGKVYENGKINRLSCSQCDKTFKNRANLRNHIKYVHSGNHSVECTQCFRTFKSHGHLRSHLDSVHAVNAEVSCNICDKVFLNQKKLKNHIYYTHPQPEDQVTCTVCFKIYKSQYNLKIHMRQVHPDGQSVSCPYCDKTFKVDMLLQRHIKWSHPDDGMIYKCQQCFKILPSLACYKKHIENTHDINSRATCQLCKRTFKTKKSLDRHVKNLHSGQDVKPYTPSKFICTFCERGFESNTTLFWHIQKYHVSDSTEATHCEICDKSYSDNASLQRHLASVHSLETATCQICMKEFKSAINLQSHIRITHAPPEAIQTCNICEKTFKCALHLRMHMNAVHTVGEFTCDVCNKSFTSAKYLNKHKKTHIETREHPCDICGKMFKSVFAANKHRRNVHSGVKCCFCHIKQGKLEEHMLKCPKRTDACVKCGKMFESNAELHGHFLTCGFEGVPIKIENEDEDLSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00662432; iTF_01529397; iTF_01528526;
- 90% Identity
- -
- 80% Identity
- -