Xspa008594.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthorhoe spadicearia
Gene Symbol
-
Assembly
GCA_947086425.1
Location
OX352209.1:5147337-5156904[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0001 0.0059 17.2 0.1 3 23 128 148 127 148 0.97
2 18 9.4e-07 5.4e-05 23.6 1.2 1 23 154 176 154 176 0.99
3 18 5.9e-06 0.00034 21.1 2.7 1 23 182 204 182 204 0.99
4 18 3.9e-06 0.00022 21.7 2.6 1 23 219 241 219 241 0.98
5 18 9.4e-05 0.0053 17.3 0.6 1 23 256 278 256 278 0.98
6 18 5.4e-05 0.0031 18.1 3.1 1 23 293 315 293 315 0.98
7 18 3.7e-07 2.1e-05 24.9 1.5 1 23 330 352 330 352 0.99
8 18 0.00017 0.0095 16.6 2.8 1 23 358 380 358 380 0.98
9 18 1.2e-05 0.00067 20.2 2.1 1 23 386 408 386 408 0.99
10 18 0.038 2.2 9.1 1.8 1 23 415 437 415 437 0.98
11 18 6.3e-07 3.6e-05 24.2 2.3 1 23 443 465 443 465 0.99
12 18 0.044 2.5 8.9 1.8 1 23 472 494 472 494 0.98
13 18 2.6e-06 0.00015 22.3 1.5 1 23 500 522 500 522 0.99
14 18 0.00049 0.028 15.1 0.7 1 23 529 551 529 551 0.99
15 18 2.9e-06 0.00016 22.1 1.9 1 23 557 579 557 579 0.98
16 18 0.0021 0.12 13.1 0.3 1 20 585 604 585 607 0.93
17 18 4e-05 0.0023 18.5 1.4 2 23 614 635 613 635 0.96
18 18 3.7e-06 0.00021 21.8 1.4 1 23 641 664 641 664 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAAATCAAAGCTGAACCTATGAGTTTCTACCATCCTCATGTTACCCATGTACATCCCGGTCCCCCAACGATAGGGCGTTCTGAGTCAAACCATCATCTCATGAACACCCATCATCACCAAGAAGACTCAAAAGATAGCCTGATAGTACAACAACAAGTACAACACCAGCAAGATCTCATGGAACAACATCAACAACAAGAATTGCAACAAGATGATGAGCTGAGCTTCAAAGGAATGGATGATGAAGGTGTTGACATGGATATGGATGGCAGACAATGTTCTCAGGGCATGGGAGTGGACATGGGTTCCATTCAAACAAAAATGGAGGTGAATGGTGGTCAATCTACGCCTCGGTCCAAACCACAAGCCTGTAAGGTATGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCGGGGAACAAACCTTTTCAATGCACAGTATGCGATGCAGCTTtttgccggaaaccatacttggaggttcacatgcgcactcacacaggcgaacgcccgtttcagtgcgacctatgcctgaagcgtttcacacagaaatccagtctcaatacgcacaaaagggtgcacacagatgagcacttgcacgcgctggtggcgaaggaccggccctacaagtgcgagctctgtcagatgcggttcacgcagagctccagcctcaacagacacaagaaaatacacacggAGGAACACAGACGAGCCCTGCTGGTCAAGGATCGGCCCTACCAATGCGGGATCTGCTTTGTGAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAGATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctcgGACGCCATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTgcgtccctatcaatgcgacatctgtgacaagcggttcacgcagaagtccagccttggcactcataagcgtatacacaccggggagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaaaatacatacgggcgagcggccctatcagtgcgacgcgtgtctcaagcgcttcacgcagaagtcgagcctcaatatacataagaggacgcattcagTCCagggcagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagattcacacgcgcacgcacaccggcgagcgcccctatcagtgcgacatctgcctcaagcgcttcacgcagaagtccagtctcaacatccacaagcggacgcactcagtgcaagggcggcccttccagtgcctgcagtgtccggccgccttcacctgcaagcagtacctggagatccacaaccgcacgcacaccggcgagcgcccctaccagtgcgacgtctgcctcaagagattcgcgcaaaagtccacactcaacattcacaaacgaacgcacacagtgcaagggcggccgtaccaatgcatggagtgcccggcggcgttcacttgcaagccgtacctggagatacacatgcgcacgcataccggggagcgccccttcgagtgcgatgtctgttacaaacgcttcacgcagaaatccacgctcaacatccacaagcgaatacacaccgGTGAACGGCCATACGCTTGTGATATCTGCCAAAAGCGTTTTGCGGTGAAGAGCTATGTAACAGCTCATAGATGGTCACACGTGGCCGACAAGCCACTAAACTGCGACCGTTGCTCGATGACGTTCACGTCCAAGTCTCAGTTCGCGCTTCACATCCGCACTCACTCCGCCGGACCGTGCTACGAGTGTAGCGTCTGCGGGCGTACTTTTGTACGGGACAGCTATCTTATACGTCACCACAACCGCGTGCACCGTGATAACCACAGCAACATGTCGGCGAACAGTATCGGGAATCTGAACAGCGTCGCTACAAACACAAACAACTCTAACAATGGCGGCTTCGACTCTCCCGGCGTTTGCGATCTGAGCTTTGTGCCGATGGTGAACCGTTACATGACATCGCAAGGCACCCAGGTGACCATGCAAGATGCACAAAAAATGGCTGCTATGTCACCACAATCGATCGCTTCTATTTCGTCACCCCCTCCCCCGCATACGCCGACGCCCCAGCCCCAAATGTCGGGCCCGCTTCACATGGCAGATTGA
Protein Sequence
MFEQQIKAEPMSFYHPHVTHVHPGPPTIGRSESNHHLMNTHHHQEDSKDSLIVQQQVQHQQDLMEQHQQQELQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSIQTKMEVNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLHALVAKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLVKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGPCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSIGNLNSVATNTNNSNNGGFDSPGVCDLSFVPMVNRYMTSQGTQVTMQDAQKMAAMSPQSIASISSPPPPHTPTPQPQMSGPLHMAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00737671;
80% Identity
-