Xdes023601.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757057.1:3947352-3951889[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.3e-05 2 9.2 0.1 21 48 265 292 260 294 0.91 2 10 0.0003 8.1 7.2 0.0 20 45 293 318 289 322 0.84 3 10 0.0019 53 4.6 0.3 21 49 359 387 355 393 0.89 4 10 0.091 2.5e+03 -0.7 0.0 22 44 389 411 387 415 0.90 5 10 0.001 29 5.5 0.3 21 48 477 504 474 510 0.91 6 10 0.0088 2.4e+02 2.5 0.0 26 48 511 533 505 536 0.89 7 10 4.5e-05 1.2 9.9 0.1 21 48 575 602 572 605 0.90 8 10 0.029 8e+02 0.8 0.0 23 46 618 641 615 647 0.85 9 10 0.029 8e+02 0.9 0.1 23 45 703 725 691 732 0.81 10 10 0.00011 3 8.6 0.1 21 46 729 754 722 760 0.90
Sequence Information
- Coding Sequence
- atgcctGATTCAAGTTTATGTAGAGTTTGCCTGGCGGATAACGTGAGAATGTATGATATTGGAAGCACTCGGTATCAAGAGATGCTAGAGAAGCTTACTGGCGAAACGATGATCTCAGGAGACGAATATCCAGACACTCTGTGTTACCTCTGTCACTCGCAAGTTCAGAGAGCGTGGAGGTTTTTTATCTCTTGTCAGAGCATGGAGAAGAACTTGGCCCGACTGCTGCAGTATGGACTTAAGGTATCGAGCTTGCCTCTGATAGACAAAACGAATGTGCACAATCTGACGCTGTCTTCCGTGAAGCAATCCTTCGACTGCGTGGTGTTGTGTGTTAAGGAGGAAATGGAGGTGCCGATCAAAACTGAGGTCCAGGACAAACGGGACCAGCTGGATGATGATGCTGAAGAGCTACCTGCAGAGTTTGAAGACAATGACTCAGAATCAGACCCTTTAGAAGCTGTCAAACCCGACACTGTTAAGATAGAAGTCAATGAAATTCCATACATCCCTTACCAATGTGACCGCTGTCCCCGAAGTTTCAACACAGCTAATGATCTTGATAAGCATAAAAAAACTCACAGAAAAAAACACAAATCCACAGATTCAGAATTAACAAAGTCCAGTGATGAAGAATTTTTAAATGAACAGTGTGAAAGAGAATTAGAGAAAGAGAAGTGTAGCAAAGAGAGTTTAATAGCGTCCGATGGAGAGAAATTCGCTTGTGTGTTGTGTAAGAAAACATTTTCACAAAAAGGCCATTTAAAAACTCATATAATGGCCTTGCACACTGGGGAAAAGCCATATGAATGCTCTATATGTAATAAAAGATTTGTCCAAAACAGTAATTTGAGAACTCATATGAAATCAGCACATACTGAAGAATCACCCCACACTTGCACTATATGTAATGGAGTTTGCAATGACGAAGGACATTTAAAAGACCATATGGGTATCCATGACTCATATATGGAAGTAAATGAATCGGGAGTGAAACCATTCGTATGTGTACAGTGTGGTAAAGCGTTTACTGCTAAAGCCCATTTAAAATCCCATATAATGGCCATACATACTGGGGAAAGACCATTTGCGTGTACCATGTGTGATAAGAAATATACGCAGAAAAGTCATCTGAGGCTGCACGCGCGTCTTTCTCATGTCATCGAGAAACCATACGCTTGCAATGATTGTGAAGTGAGATTCGATGACTCGGATGCGTTGAGGAAACACGCAAAATCTCACGAAAAATCAACATTTATTTGCTCCACTTGCAACAAAATGTTTCTTACTGAAGCCAGTCTGAAAAAGCATGTGCTTGTTCATAACGACAAATGCCTTAATAAAGTGAAACCGTTCTCTTGTGTGTTGTGTGGCAAGGAGTTCGGTTGGAAATCACATTTAAAAACTCATATAATGGCCATACATACCGGCGAAAGGCCATATTCCTGCTCTGTGTGTGACAAAAGATTCGTTCAGCGGAGTAATTTAAGACTGCATTCAAAAGTAGCTCATTCTATCACAAGCTCGTTGAAATGCGACCTGTGCAAGAAAGTGTTCCGAACAGAAAGTAATCTTAATATACACATGAAGAGTGTACATTTGCATGTTGAGACAAAAAATCAGACGGGTGATGATATAAACAAGCCGTTTGGATGTGTTATGTGCAGTAAGAGATTCGGATGGAAATCACACTTAAAAACCCACATCATGGCGCTCCACACCGACGAGAGACCTTACGCATGCCCTATTTGTGACAAAAGGTTTGTACAAAAAAGCTACTTACGATATCATTTGAAAACTGTACATCCTGGTGAAAAAGCAACGCAACTTATGACTAATATAGGTCATGGAAGACCGTTCACATGCAGAGTATGCTCTATaacgtttaaaaacaaaatcaacTTTGAGAAACATAAAATGCTACATACGGACACTCCACCGTTTCTATGTGTTAAGTGCGATCAGAAATTTGTCTCCAAAAACGACATGGACTCCCATAACTTAAGCTTGCACGCTCTAGACTTACCATTTGTCTGTGCTACTTGCGATTCGAGATTCGAGGACGAAAATGGCTTAAAGAAACATCATTTAACACACTCGGAATACTTTCCTCTGTCCTGCCAAGTTTGCAACCGAGTATATCTATCAAAATCTGCGTTAAAACGACATCAAGTCATCCACAGCGATGAGAAACCATTCTCATGTACATACTGCAAGAAATCTTTCAAACAGGAGcgtgtattaaaaaaacatttgcaGATACACACAGAGGAAAAGAAATTTGGGTGCGATATATGTGGTAGAAAGTTTTATCAGCGAGATGGTGCATACTGGGGAGCGACCTTATCCATGTGA
- Protein Sequence
- MPDSSLCRVCLADNVRMYDIGSTRYQEMLEKLTGETMISGDEYPDTLCYLCHSQVQRAWRFFISCQSMEKNLARLLQYGLKVSSLPLIDKTNVHNLTLSSVKQSFDCVVLCVKEEMEVPIKTEVQDKRDQLDDDAEELPAEFEDNDSESDPLEAVKPDTVKIEVNEIPYIPYQCDRCPRSFNTANDLDKHKKTHRKKHKSTDSELTKSSDEEFLNEQCERELEKEKCSKESLIASDGEKFACVLCKKTFSQKGHLKTHIMALHTGEKPYECSICNKRFVQNSNLRTHMKSAHTEESPHTCTICNGVCNDEGHLKDHMGIHDSYMEVNESGVKPFVCVQCGKAFTAKAHLKSHIMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVIEKPYACNDCEVRFDDSDALRKHAKSHEKSTFICSTCNKMFLTEASLKKHVLVHNDKCLNKVKPFSCVLCGKEFGWKSHLKTHIMAIHTGERPYSCSVCDKRFVQRSNLRLHSKVAHSITSSLKCDLCKKVFRTESNLNIHMKSVHLHVETKNQTGDDINKPFGCVMCSKRFGWKSHLKTHIMALHTDERPYACPICDKRFVQKSYLRYHLKTVHPGEKATQLMTNIGHGRPFTCRVCSITFKNKINFEKHKMLHTDTPPFLCVKCDQKFVSKNDMDSHNLSLHALDLPFVCATCDSRFEDENGLKKHHLTHSEYFPLSCQVCNRVYLSKSALKRHQVIHSDEKPFSCTYCKKSFKQERVLKKHLQIHTEEKKFGCDICGRKFYQRDGAYWGATLSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528492;
- 90% Identity
- iTF_01528492;
- 80% Identity
- iTF_01528492;