Xdes023762.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- ken
- Assembly
- GCA_963582015.1
- Location
- OY757058.1:408788-411464[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00018 0.013 16.5 3.2 1 23 12 35 12 35 0.98 2 18 0.16 11 7.3 0.5 2 23 42 63 41 63 0.96 3 18 0.0068 0.47 11.6 1.2 1 17 69 85 69 86 0.93 4 18 0.07 4.9 8.4 2.4 1 23 124 146 124 146 0.97 5 18 1.2 81 4.6 0.1 2 23 171 193 170 193 0.87 6 18 0.0047 0.33 12.1 0.5 1 23 212 234 212 234 0.97 7 18 0.0036 0.25 12.5 7.6 1 23 239 261 239 262 0.95 8 18 0.018 1.3 10.2 5.6 1 23 267 290 267 290 0.94 9 18 0.0069 0.48 11.6 3.1 2 23 293 315 292 315 0.95 10 18 6.4 4.5e+02 2.2 0.2 2 20 322 340 321 342 0.90 11 18 0.017 1.2 10.4 1.8 1 23 398 421 398 421 0.97 12 18 0.0022 0.15 13.1 0.5 2 23 496 518 495 518 0.95 13 18 3.2e-05 0.0023 18.9 0.5 3 23 525 546 523 546 0.95 14 18 0.00027 0.019 16.0 0.7 2 23 551 573 551 573 0.96 15 18 0.0017 0.12 13.5 0.3 1 23 578 601 578 601 0.97 16 18 0.0017 0.12 13.5 6.2 1 23 605 628 605 628 0.97 17 18 0.027 1.9 9.7 1.9 3 23 636 656 635 656 0.96 18 18 2.7e-06 0.00019 22.3 1.3 1 23 662 684 662 684 0.99
Sequence Information
- Coding Sequence
- ATGAGACACGTTATAAAAGTGCATGACGGTGGTCACAAGTGCTCGTACTGTGGTATGGCCTTCATCAAGTACTCGTTTATGAAGAACCATATAAGGCGCCTGCATTTTAAAGAGAAGAATGTTCAGTGCGCGCTTTGTACGGAACAATTCTTTGATACGAATCGTCTGAAGTTGCACATGGTACGGCATGTGGGCGAGAGATCGTTTCGCTGTGACTACTGTGGAAAGCGATTCTTGAGGAAGAAGAATCTTAGGGatgAAACGCCCCCCGCCCCCCTGTCTGGCCGAAAAACGTCTCTTCGACGGAGGAAAAGCTTGAGAACATTATTCGATAACACAACTATTTTCCCCTTCAAATTTCGCGAGACCCACGTTTGCTTCTACTGTAGCGCTTCTATCAGCGATTACGTAGAGTTCAGAAAGCATACCAAGTCTCACTGCAAAAGTAATCAGGCGTTGAAAGAATTAAAAGAAAACGCGGAAACTATTAAGGTTGATGTATCGGATATAACGTGTGAGCGTTGTGAACAAGAATTCAAAACCCTAGAAGTGGTTGTTGAGCATTTGATAAACGAACATGGTTTGCTCTATGACAAGGAGATTAATAACATCGTAGAATACAGACTGATTGATTTCCGCTGCACACAATGTGACGCGCAATTCGAAACATTCAGAGATTTGGATGTTCACATCAGCAATCATCGTCAAAATGGTTTCATCTGTCATCACTGCGAACGTATGTTCATAAAAAAGAGTGATATTACCTCGCACATGTTTAAACACCATCGATTTGGAGGGTTCACTTGTAAACAATGTGGTATTGAGTGTAGAAGTCGATTCAAATTGCGGAAACACACAGAACACGCTCACATGACGCGATGCCACGTTTGCGGTGATGTATTCGTGAACTTAAATAAACTGTGCAAGCATCTCAAGCTGGAACATCCAAGTGATAATAACAAAACCTGCGGCTACTGCTTAATAGAGTTCCAAACTATGCTCGGTTTGAAACAGCATTTGACGAAATGCAAACTAAGATTACCTACGCTCTACAAGAATgaaaacttaactataattagCAGCAAAAACGCTAACTCGTCAAGAACGCATGAGCAAATCGTCCGTATTCGTGAGAATATACAATGCGTCCTAAACATGTCCACCGCAGTGCCGTTTCGGTTTCGTGTCAAATTCTCCTGCTTCTACTGCTCTCAGAAGTACGACGACTACGAAGTTCTCAAACAGCATACGCGTTCTGAGCATCCCATTTGCGATATCAAAAGCAAATGCATGAAGACTTGTAAAGGAAAACGCACGTTTGTGAGAGTTGATATAGCAGATCTCGCTTGCAAACTGTGCTCTGCTCCTATGCCCGATTTGGACAACTTTATCGAGCACGCGATCTCAATTCACAATGCGGACTACGATAGGTCCGTCAgcatcgaaacttgcttcgagCCGTATCGGCTCGTTAAAGGCAACATCCAATGTCTCGAATGTCCAAAAGTCTTCAGATACCTCAACACAATGCTGCGGCATTTCAACTCGGATCAcagcaataataatgttatctGTGATTACTGCGGGCGTGGCTTCCGCAGTACGACCAATCTTAAAATGCATCTGCAGAACACGCATACAGGGTCTGCAGAATGCAAGATTTGCAGCGCGAAGTTTAAAAACCGATCGGTTCTAGTGCGTCACATGGCAAAAAGCCATAATGAAATGACTTTCAAATGCCCTAACTGTTCGGAGATGTTCGCGTCTGCGTACAAGCGCCAGATCCATCTAATCAAAGTCCACGGTATCGGACATAAATGCGAGTATTGCGGTAAAATGTTCACAAAACACTCTTTCATGGATTCTCATGTGAGACGCACACACTTGAAGGAGAAGAATGTCGCTTGCTCGATTTGCAACGATAAGTTCTTTGACAATCATTTGCTTAAGATGCATATGGTTAAGCACGATGGGGAGAGGAAGTTTAAGTGTGAGTTGTGTGGTAAAGCGTTTTTGAGGCAAAAGAATTTGCGAACTCATATGGATACTCATAAGAAATACGGATTTGTGCAGTaa
- Protein Sequence
- MRHVIKVHDGGHKCSYCGMAFIKYSFMKNHIRRLHFKEKNVQCALCTEQFFDTNRLKLHMVRHVGERSFRCDYCGKRFLRKKNLRDETPPAPLSGRKTSLRRRKSLRTLFDNTTIFPFKFRETHVCFYCSASISDYVEFRKHTKSHCKSNQALKELKENAETIKVDVSDITCERCEQEFKTLEVVVEHLINEHGLLYDKEINNIVEYRLIDFRCTQCDAQFETFRDLDVHISNHRQNGFICHHCERMFIKKSDITSHMFKHHRFGGFTCKQCGIECRSRFKLRKHTEHAHMTRCHVCGDVFVNLNKLCKHLKLEHPSDNNKTCGYCLIEFQTMLGLKQHLTKCKLRLPTLYKNENLTIISSKNANSSRTHEQIVRIRENIQCVLNMSTAVPFRFRVKFSCFYCSQKYDDYEVLKQHTRSEHPICDIKSKCMKTCKGKRTFVRVDIADLACKLCSAPMPDLDNFIEHAISIHNADYDRSVSIETCFEPYRLVKGNIQCLECPKVFRYLNTMLRHFNSDHSNNNVICDYCGRGFRSTTNLKMHLQNTHTGSAECKICSAKFKNRSVLVRHMAKSHNEMTFKCPNCSEMFASAYKRQIHLIKVHGIGHKCEYCGKMFTKHSFMDSHVRRTHLKEKNVACSICNDKFFDNHLLKMHMVKHDGERKFKCELCGKAFLRQKNLRTHMDTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661602;
- 90% Identity
- -
- 80% Identity
- -