Xdes004625.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757032.1:6279928-6280872[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-09 2.8e-06 27.5 0.1 2 40 10 48 9 52 0.92 2 2 5.1 4.1e+03 -1.8 0.0 17 23 126 132 122 132 0.86
Sequence Information
- Coding Sequence
- ATGCCTCCTAAACGGGCATTGTGGTCACAAGATGACCTGGTCTCAGCTGTTCGCGCAGTTCAGAGAGGAATTTTGAGTACATATGCGGCTGCGGAAAGATACAGGATTCCAAGAAGAACCATCAGAAACCATGTCGAGAGTGGTGTTGTGGTGAAAAGCTTGGGTCGTAAGCCCGTATTGAATCCCGAACAGGAAGCTGATCTTGTAAAGAGGATAATCAGGTATGCGGAAATAAGTTTACCTGTCACACCAAGAATACTGCGTCGGTTGGTGTACAAATATTGCGAGCTTAATAACATAAAGCATAATTTTGATGAGACTGCTAAACGCGCAGGTAAAGACTGGCTTAAGGCGTTTATGAAAAGACATCCCGAATTGTCTATACGAAAAGCACAGTTCATGAACCCTGCTAGAGCCCAAAagctaaataaatttattgtagATGACCACTTTGAAAGACTGAATGAAGTTTATGATAAACTGGAGCTGAAAGATCATCCAGAAAGAATTTATAACATGGATGAGAAGGGATGCCGTCTGACAATCCATCACCAGCAAAGTGTTTTGGCCAAAAAAGGAGCAAAAAGGGTTCATTTGCAGTCTTATGAACATGTAGAAAGTGTGACTATCGCAGGATGTGTGACCGCACTCTGTACTGCTATACCGCCAATGGTGATATTCAAGGGACAACGTTTGAAGCCAGAATTGTACGACAATTTGCCACCGGGTTCTTTGGTTGAAAAGTCTGCAAAGGGGTACATGACAAACGAGCTTttcaaagaatttttgaaacatCTGGCCAGATACAAAAGCGCAGGACCTTGCCTCTTGATATTTGATGGAGCAGCATGTCATTTAGACCTTTCCATTGTCGATGTATCAGAATCActtgatattataatatataatatcatTATATTGCTTACCGTCGAACACCACTCATGA
- Protein Sequence
- MPPKRALWSQDDLVSAVRAVQRGILSTYAAAERYRIPRRTIRNHVESGVVVKSLGRKPVLNPEQEADLVKRIIRYAEISLPVTPRILRRLVYKYCELNNIKHNFDETAKRAGKDWLKAFMKRHPELSIRKAQFMNPARAQKLNKFIVDDHFERLNEVYDKLELKDHPERIYNMDEKGCRLTIHHQQSVLAKKGAKRVHLQSYEHVESVTIAGCVTALCTAIPPMVIFKGQRLKPELYDNLPPGSLVEKSAKGYMTNELFKEFLKHLARYKSAGPCLLIFDGAACHLDLSIVDVSESLDIIIYNIIILLTVEHHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157585;
- 90% Identity
- iTF_00697263;
- 80% Identity
- -