Xtog008620.1
Basic Information
- Insect
- Xanthia togata
- Gene Symbol
- -
- Assembly
- GCA_963853775.1
- Location
- OY970791.1:2481731-2482438[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-08 1.3e-05 26.4 0.0 2 37 8 43 7 47 0.89
Sequence Information
- Coding Sequence
- ATGACTGAAAGAAACTTCAAGCAAGAGGACCTTTTAAAAGCCATAGAAGCTGTAAATCAAGGGGCCACAACATCAGATGCAGCAAGAAAATTTAAAGTGCCAAGGACCACATTAAATGACAAGATTAAAGGGCGTAGTTTAGTCGGCTGCTCTAAAGGACCAACGACTGTTTTAACTCCGgaagaagaagaacatttaAAGAACTGGTTAATTTTCATGGCAGAAAGTGGTTTTCCTGTAACATCAGATCAGTTATTAGATAGCGTCAAATTATTAGTTACCAAATTCAAACGTAGTAACCCATTTACTAACAATAGACCAGGTCGACATTGGTTCGAGTCATTCATAAAGCGTCACCCTGAAGTGGGTCGGAGGGTGTCCCAAAATTTGACACAATCTCGAGCATTAGTAACGGAAGATGATGTTCGTACCTGGTTCAAAGAagttaaggattatttttggaCTGCTCAGCTACAGGCAACTTCTGAAGACCCGCGGGGAATTTTTAACTGCGATGAGAGCGCCTTTTTCTTGTCCCCCGCTGACAACCGAGTCTTAGCGAAACGTGGGtctaaaaatgtttacaatatAATACCAAGTGGAGAAAAAGAGTGCGTAACAATTCTACTAACAGCTAATGCATCAGGTGAATTGGCACCGCCGATGGTTCTTTTTAAGCTTAAGTCAATCCCTCACAAAATTTCGTAA
- Protein Sequence
- MTERNFKQEDLLKAIEAVNQGATTSDAARKFKVPRTTLNDKIKGRSLVGCSKGPTTVLTPEEEEHLKNWLIFMAESGFPVTSDQLLDSVKLLVTKFKRSNPFTNNRPGRHWFESFIKRHPEVGRRVSQNLTQSRALVTEDDVRTWFKEVKDYFWTAQLQATSEDPRGIFNCDESAFFLSPADNRVLAKRGSKNVYNIIPSGEKECVTILLTANASGELAPPMVLFKLKSIPHKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527075; iTF_01527076; iTF_01527077; iTF_01264523; iTF_01527073; iTF_01533873; iTF_00667357; iTF_00667356; iTF_01527071;
- 90% Identity
- iTF_00445087;
- 80% Identity
- iTF_01527075; iTF_01527076;