Dbru002140.1
Basic Information
- Insect
- Diarsia brunnea
- Gene Symbol
- -
- Assembly
- GCA_949774965.1
- Location
- OX458996.1:31726366-31727022[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-07 4.3e-05 24.1 0.0 4 37 10 43 7 47 0.88
Sequence Information
- Coding Sequence
- ATGACTGAAAGAAACTACAAGCAAAAGGACCTTTTAAAAGCCATAGAAGCTGTAAATCAAGGGGCCACAACATCAGATGCAGCAAGAAAATTTAAAGTGCCAAGGACCACATTAAATGACAAGATTAAAGGGCGTAGTTTAGTCGGCTGCTTTATAGGACCAACGACTGTTTTAACTCCGAAAGAAGAACATTTAAAGAACTGGTTAATTTTCATGGCAGAAAGTGGTTTTCCTGTAACATCAGATCAGTTATTAGATAGCGTCAAATTATTAGTTATCAAATTCAAACGTAGTAACCCATTTACTAACAATAGACCAGGTCGACATTGGTTCGAGTCATTCATAAAGCGTCACCCTGAAGTGGGTCGGAGGGTGTCCCAAAATTTGACACAATCTCGAGCATTAGTCACGGAAGATGATGTTCGTACCTGGTTCAAAGAAGTTAAGGATTATCTTTGTACTGCTCAGCTACAGGCAACTTCTGAAGACCCGCGGAGAATTTTTAACTGCGATGAGAGCGCCTTTTTCTTGTCCCCCGCTGACAACCGAGTCTTAGCGAAACGTGGGTCtaaaaatgtttacaatatAATACCAAGTGGAGAAAAAGAGTGCGTAACAGTTCTACTAACAGCTAATGCATCAGGTGAATTGGCATAG
- Protein Sequence
- MTERNYKQKDLLKAIEAVNQGATTSDAARKFKVPRTTLNDKIKGRSLVGCFIGPTTVLTPKEEHLKNWLIFMAESGFPVTSDQLLDSVKLLVIKFKRSNPFTNNRPGRHWFESFIKRHPEVGRRVSQNLTQSRALVTEDDVRTWFKEVKDYLCTAQLQATSEDPRRIFNCDESAFFLSPADNRVLAKRGSKNVYNIIPSGEKECVTVLLTANASGELA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445080;
- 90% Identity
- iTF_01264523; iTF_01527073; iTF_01533873; iTF_00667357; iTF_01527074; iTF_01527075; iTF_01527076; iTF_00667356; iTF_01527071;
- 80% Identity
- -