Xict036100.2
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OY855862.1:476224-478582[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00087 36 5.7 0.0 12 45 167 202 161 207 0.68 2 4 0.0084 3.5e+02 2.6 0.1 23 51 290 318 281 320 0.84 3 4 3.7e-07 0.016 16.5 0.0 21 46 371 396 365 402 0.90 4 4 0.015 6.4e+02 1.8 0.2 19 43 454 478 432 486 0.83
Sequence Information
- Coding Sequence
- ATGGCAAGCAGAATACAATTTGAAGATGAAATTGTTGaccaaaatctaaataaaaccaATGGACCCGAATTAAATCAAGAAATGACAATAAAGGAAGAAGGTCCATCAGATGAGGGTATCTGCACTCCAGATCCTATTGAAGGAAAAGAAAACCAGGATTTAACAGAAACAAATTCTGAGACAGTTAATACCACTGAACCTAGTAACAATGAAATAAtagaaaatgtaatatttattggCAGTCGAGTACAACAAACTTATGAAGTTCCAATTGAACAAGAGGCTAACATTGCTCAAAGTGAGGGTAATGTTATCATAGTTGGAGGGGGTAAGGGTAAGAGGAAGAATAAAACTGAGCTAGAGATGCTTGGTATAGATATAAAGGAGAATAATGAAGATTTAGAAGCTGAATATGATGTGTTTGGAGatgaaagtaaaatatttagaaagtaTAAATTGAGGAAAACTGAGCAACTAATCTCATATAAGGAGCCAGCGGACATCAAACCCAAACGCCGAATCAGTACAGATGACGAAGCGGACTTGACCTGTCCTGTTTGCCAGCAAGAGTTTGAAAACAAGATGGCATTACTAAATCACCTCAGAATCCACAATAAAACTGTACATGAATACACCTGCTCACTATGTTCAAAGAAATTCGAAAAAAACGCAGACTTAATTGCCCACAGAGAGAAGCATAGCTCAGAGTCTTTTCTCTGCCACGCTTGCAAACTAGCATTTTCAAATTACCGTGATTATTTACTACATAACTACGATCATTTGAGTCACCCACATTTCAAATGCACGGAATGTGGACTGCGCTATCGAAAATCATTCTACAAACAACACACTATGACACATTTTGAAAAGCTATTATCCTGCGACTTATGCCCTTTCGTTACCAACGGCGAATACAATCTACGGGCTCACATAAATCAGCATAATTACTGTAAATTTGTTTGCGTCGAGTGTGGAAAAGTGTGCAAGTGCAAAAAAGATTATGAATATCATATGAGTATACATACTGGGGTTAAGAGGATTCAGTGTCTTTACTGCGGAGCATGTTTTCGCAACCATAACGCGAGGGATGTGCACACTAGAATACACACAGGTGAAAAGCCTTTCACCTGCAACATTTGTGGGCACAAATCGCGGCAATCGACAGATTTGAAACGACATAAAGAGACTCATGGCACTGAGAAAAAGTATGCGTGTAATTTGTGtgggaaaaaatatttgcacaAAGATTATCTTGTGATTCATATGAGGTCTCATACAAAGAAGTGTTTGTATGAGTGTCCAGAGTGTGATGCTAACTTTATCAGTGTGGCTGGGTTGAAGACTCATACGATGTACAAGCATACGAGTGAGCGCCCTGTTGAGTGTACGCTTTGTGATAAAAAgttcattaataataatcaatatcgGAAACATTGTAGGGCGAAGTATCATTTGAGAAATGTGTATGggaataattataaaaagaaagatgAAGTTTGA
- Protein Sequence
- MASRIQFEDEIVDQNLNKTNGPELNQEMTIKEEGPSDEGICTPDPIEGKENQDLTETNSETVNTTEPSNNEIIENVIFIGSRVQQTYEVPIEQEANIAQSEGNVIIVGGGKGKRKNKTELEMLGIDIKENNEDLEAEYDVFGDESKIFRKYKLRKTEQLISYKEPADIKPKRRISTDDEADLTCPVCQQEFENKMALLNHLRIHNKTVHEYTCSLCSKKFEKNADLIAHREKHSSESFLCHACKLAFSNYRDYLLHNYDHLSHPHFKCTECGLRYRKSFYKQHTMTHFEKLLSCDLCPFVTNGEYNLRAHINQHNYCKFVCVECGKVCKCKKDYEYHMSIHTGVKRIQCLYCGACFRNHNARDVHTRIHTGEKPFTCNICGHKSRQSTDLKRHKETHGTEKKYACNLCGKKYLHKDYLVIHMRSHTKKCLYECPECDANFISVAGLKTHTMYKHTSERPVECTLCDKKFINNNQYRKHCRAKYHLRNVYGNNYKKKDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00623438;
- 90% Identity
- iTF_01526402; iTF_01527634;
- 80% Identity
- iTF_01526402;