Basic Information

Insect: Xanthia icteritia
Gene Symbol: -
Assembly: GCA_949128155.2
Location: OX421935.2:12597305-12605289[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.4e-05 0.0015 20.0 0.5 1 23 479 501 479 501 0.99

2 8 9.8e-07 0.0001 23.7 1.4 1 23 507 529 507 529 0.98

3 8 8.8e-06 0.00094 20.7 0.6 2 23 538 559 538 559 0.98

4 8 9.7e-06 0.001 20.5 0.7 1 23 565 587 565 587 0.99

5 8 1e-07 1.1e-05 26.7 2.1 1 23 593 615 593 615 0.98

6 8 6.2e-07 6.6e-05 24.3 1.3 1 23 621 643 621 643 0.97

7 8 0.0001 0.011 17.3 7.3 1 23 649 671 649 671 0.97

8 8 7.6e-05 0.0081 17.7 0.9 1 22 677 698 677 698 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.4e-05	0.0015	20.0	0.5	1	23	479	501	479	501	0.99
2	8	9.8e-07	0.0001	23.7	1.4	1	23	507	529	507	529	0.98
3	8	8.8e-06	0.00094	20.7	0.6	2	23	538	559	538	559	0.98
4	8	9.7e-06	0.001	20.5	0.7	1	23	565	587	565	587	0.99
5	8	1e-07	1.1e-05	26.7	2.1	1	23	593	615	593	615	0.98
6	8	6.2e-07	6.6e-05	24.3	1.3	1	23	621	643	621	643	0.97
7	8	0.0001	0.011	17.3	7.3	1	23	649	671	649	671	0.97
8	8	7.6e-05	0.0081	17.7	0.9	1	22	677	698	677	698	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGCTATCGCACGGGCAGTGGTGCGATGTGAAGCTCCTGTGCGGCGGACGCGCATTCAGCGCACATCGCGCCGTGCTCGCCAGTGTTAGCACTTTTCTCAGACGTCTTCTCCTTTCTTGTCCCACAGATGAGTCGCCGACTTTTATCGTTTTGCCAGATTTTGACCTCGACGCTATGTCATCTGTGctttattacatttataatgGAGAAGTCATtgtgcaaaaagaaaaaattgaaatgtttcTAGACATTATAAAAGCCATGCAAATATTTGTAGACTGTCAATATTTGCGGCAAATATCTGATACATTAGACTATAACAATTTCGACTCAAGTTTTCACTACGGAACTGATTTGtcaaaaagaaatatatttacttTAGGATTTGAAGGCTGCAGAGAtcaaagatacataaatataaaaaaaggcaAAATCCAGGATGTATTACAGTATTCAGTTAGCAACTCAGATTGCAAAGATACGCTGGTACGTAGTCAGAATCCAAGTGGAGAGCGTCAGTCTTCTTTAGGAAATCTGAAATCGCCGTATGGAGACCGACAAAGGAACTCTTTTCTACGTGATTTATTTATCGAGACATATCCTCGAAACGGTAATGTTAACGGTCTGACGGCAGGCGTGCTAGCAATATCAAATGAATGCTATCGTGCTCCGGCATCTGTGCTCTTGACGAATGCAAATGGCAAACATCTCAGCGCCGACGGTTCACTCTTAGAACCATATAAAAAAACGAACGAGCACATCAGTCATTCGCCTACAGTATTTCACCTTCGTAAGCAGCGATGCACTCGAGATGAACCAGATTACGGTGAAACCAACGAAACTTTGTCTGACCAATcttgtcaaaaatattgttcGGCTCAGAAAAGTAACACACATGTTTTTGccactgaaaaaaataatttaccgaTGAATATATTAATGAACCATGTCCCTATGTCGGCTAATCCTTTGCTTCAGTTGGGGTTACAGGAACAGATATTGTCAGGATTTTATGTTCCTTCCTTGGACTTTAGTATCGCACCATCAGTGTTTGATTCGATAAAACCGATGCCAGTTCATAGAAATAGATCCGTCATTGACAATGCTAGTGATGAAAGTAGTAAAGAAATAGACGTGACAACGTCTGCTAAAGTAACTATTTTAAATCATGTATTAGAGAGTCCATGGAGCCCTCGGATACCTAACAACTACAAACCGTTCCGTAGAAAAACTGAACGCTTGTTGGAGTCACAATTGTCTAAACAAAAAaaaaacgAAAATAGCTTAGTAAACGATAGCAACAACAATGTTCCTAAACCTAATCTATCATCAATTTCGGATGCGGTTAGCGAAGCTGCGAAGCCTGCAGGGGACGTGAAACAAATTACGACAGTGGCAGGTCTACCAAACACCCGGAGAGATGATTTCAAGTGCACTATTTGCAATCAGGTGTTCACGAGTGGCGAGTCGCTCGCGGTGCACACGCGGCGTCACTCGGCGACCGCGCGGTACTCCTGTGGCGAGTGCGGCAAGACGTTCTCTCAGCTGCGCAACTTCAAGTACCACATGTCCATACATCGAGGGACCAGGGAATTCGCAGCCACCTGCACCGTGTGCGGCAAATACTTCAATGATAGAGGATATCTCAGCAGCCACATGAAGATCCATCGGAACCGTAAAGAGTACAAGTGCACACTCTGCCCCAAGTCTTTCAATCAACGCGTTGCTTACAACATGCATGTGAGGATCCACACAGGTGTGAAGCCTCACGTCTGCGAGGAGTGCGGCAAGGCGTTCTCCCGCAAGATGTTACTGAAGCAGCACCAGCGCACGCATTCGGGCGAGCGTCCGTACGCGTGCCCGCACTGCGACAAGCGGTTCGCAGACCGTTCCAACATGACGCTACACTTGCGACTACACACAGGGGTGAAACCGTTTTCCTGCACGCTGTGCCCCAAGTCTTTTACAAAGAAGCATCACTTGAAGTCGCACTTGAACTTCCACACTGGTTCCAAGCCGTACTCGTGTCCTCGCTGCAAGCTGGCCTTCACCCAGTCCTCGAACATGAGGACGCATCTCAAGAAGTGCCGAGCGCCTGAACCAGCGAACAGTGACACTCCTCAGATCGGAGATATGACAGTGCAGCTGCAGACGTAG
Protein Sequence: MCEWLSHGQWCDVKLLCGGRAFSAHRAVLASVSTFLRRLLLSCPTDESPTFIVLPDFDLDAMSSVLYYIYNGEVIVQKEKIEMFLDIIKAMQIFVDCQYLRQISDTLDYNNFDSSFHYGTDLSKRNIFTLGFEGCRDQRYINIKKGKIQDVLQYSVSNSDCKDTLVRSQNPSGERQSSLGNLKSPYGDRQRNSFLRDLFIETYPRNGNVNGLTAGVLAISNECYRAPASVLLTNANGKHLSADGSLLEPYKKTNEHISHSPTVFHLRKQRCTRDEPDYGETNETLSDQSCQKYCSAQKSNTHVFATEKNNLPMNILMNHVPMSANPLLQLGLQEQILSGFYVPSLDFSIAPSVFDSIKPMPVHRNRSVIDNASDESSKEIDVTTSAKVTILNHVLESPWSPRIPNNYKPFRRKTERLLESQLSKQKKNENSLVNDSNNNVPKPNLSSISDAVSEAAKPAGDVKQITTVAGLPNTRRDDFKCTICNQVFTSGESLAVHTRRHSATARYSCGECGKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCTLCPKSFNQRVAYNMHVRIHTGVKPHVCEECGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGVKPFSCTLCPKSFTKKHHLKSHLNFHTGSKPYSCPRCKLAFTQSSNMRTHLKKCRAPEPANSDTPQIGDMTVQLQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00622996;
90% Identity: iTF_00758480;
80% Identity: iTF_01526228;