Xict029704.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421952.2:16393952-16394443[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-09 1.1e-06 29.4 0.0 4 41 17 55 14 57 0.94
Sequence Information
- Coding Sequence
- ATGGTTCGCcactatagaaaaaaaacggaCAAGTCATACACTATGGCAGAATTGCAGCAAGCAGTGAAAGATGtcaaaaataaagtaatgaCGAGTTACCAAGCTGAAAAAATATATGGCATTCCTAGATCAACCATTGTAACTAGAGTTTACAATAATCATATGAACGACAACGTTGGAAGACCTATAGCTCTCGGGGAAGATGTGGAAAGAAGAATTGCCCATAGCTTACATGTTATGGAAAAACATGGTTTCCCGTTAACTAGAAAAGAAGTAGCTGTTTTGGTATCTCAATATGTCCGCCAAAATGGAATCGACAATCCCTTCAAAAATGATTTGCCAGGAAAAGACTGGCTCCAGGCATTTCAGAAAAGGAACAGTCTCACAATCAAAAAGCCTCAGTCCGTTGAGATAGCTAGAAGAAAGGCTTGCGATCCTTTCTATTGcctttatattgtatttatattgcCGATTGTATATGACCGATTGTAG
- Protein Sequence
- MVRHYRKKTDKSYTMAELQQAVKDVKNKVMTSYQAEKIYGIPRSTIVTRVYNNHMNDNVGRPIALGEDVERRIAHSLHVMEKHGFPLTRKEVAVLVSQYVRQNGIDNPFKNDLPGKDWLQAFQKRNSLTIKKPQSVEIARRKACDPFYCLYIVFILPIVYDRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121354;
- 90% Identity
- iTF_00121354; iTF_00124188; iTF_01118209; iTF_01118210; iTF_01118211; iTF_00952649; iTF_00825644; iTF_01118203; iTF_01118207; iTF_00071328; iTF_01118208;
- 80% Identity
- -