Xict001984.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- bab1
- Assembly
- GCA_949128155.2
- Location
- OX421931.1:3835542-3839063[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-17 2e-14 54.2 0.0 1 43 27 70 27 72 0.95 2 2 5.8 2e+03 -0.3 0.3 6 15 164 173 153 175 0.80
Sequence Information
- Coding Sequence
- ATGTGGCAGAAGTGCTGGAACACGCAGACACTGGTGCACAACCTGAGATTCCGCGAGCGTGGGCCCCTCAAGTCCTGGCGGCCAGAGACCATGGCCGAGGCCATCTTCTCCGTGCTGAAGGAGGGACTCTCCCTGTCACAGGCAGCCCGAAAATACGATATTCCGTACCCGACGTTCGTCCTGTACGCCAACAGAGTCCACAACATGCTGGGCCCCAGCGCGGACGGCGGCGCAGATTTAAGACCAAAGGGAAGGGGGCGGCCACAAAGGATCTTACTGGGCGTTTGGCCTGACGAGCACATCCGCGGCGTAATCCGCGCGGTTGTGTTCAGAGACACGCACGCACCCTGCCCGCCACAGGCCACGAACCTAAAAGAGATCGAACTGCCGGGCTACCCTGCCATCGCACCGGACGGTGTGGCCGTTCAGAACGCTTACATCGGGTGTGGCAACGGTCGCGAGGGCCGCATGTCGCCCAACGCCGCAGCTGCCGCCGCCGTGGCCGCCGTGGCGCACGGTCTGCGCCGCCAGATGTGCAACATGGTAGCTGGCCAGCGCCCCCCCGACCACCCGCCGCACCTGGGCCCCCCCATGCAGTCGTCACCACAGCTCACGTCGCCGCTGTCCACCGGGCTGGAGTCACCGTTGTGCTCGCCCCCGCCGCCCGGCCACGCGCTGGAGCCCGCCAAGCACCCGGACCCGTTCCGACCCTTCGCCTCACCGACTGAGAGCCGCTACGGCGACCGCGAAACATCCGACATTACACTGATGGGACCGCCGAAGAATGGCCAGCAGGGCCACGCCAGGAAGGGCTCCGGCCAGGGCTCGTCGCCCTCCGAGCTTGACGCGAGCGACGGGCGCGCGGACATCTGA
- Protein Sequence
- MWQKCWNTQTLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPCPPQATNLKEIELPGYPAIAPDGVAVQNAYIGCGNGREGRMSPNAAAAAAVAAVAHGLRRQMCNMVAGQRPPDHPPHLGPPMQSSPQLTSPLSTGLESPLCSPPPPGHALEPAKHPDPFRPFASPTESRYGDRETSDITLMGPPKNGQQGHARKGSGQGSSPSELDASDGRADI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425864;
- 90% Identity
- iTF_00794266;
- 80% Identity
- iTF_00363946;