Wsmi031685.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:211107633-211108886[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0074 45 6.0 0.0 26 45 186 205 181 209 0.91 2 4 0.0087 53 5.8 0.1 23 48 211 236 208 241 0.91 3 4 0.00046 2.8 9.8 0.0 16 45 272 301 262 304 0.89 4 4 0.004 24 6.8 0.5 21 51 305 335 301 338 0.92
Sequence Information
- Coding Sequence
- ATGAACTACGAATACCTTCAGGAACATTTAGATCTCTCAACCTGCCGTTCGATTTGCCGCTTATGTTTGTGTACCAGCGGGAAAATGGAAGACCTATTTTTTAATGATGACGACGATCAACTAATTGAGAAAATTGCCGAATGCACGGCTATTAAGATGGCTCCTGCAAACGGTGTGATTTCATCTATTTGTCATACATGTAAAACGAATCTCTCGTCCTTTTATCGGTTTCGTGAGCAGTGTATAAGGAGTGAGGAAATCTTTCAAAGTAAAACGGATAAAATGGAGAAAGAGACGATCGAGGTAGTGCCGGATATATTCAGTCTTCACAGCGAAGATGAAAATGAAACTAGTGAAATTAATCAGGACAACCCTTACGGTGATATGAACTTCGTAGAGGCCTTGAATTCGATCATAAAAATAGAGCAAACACAAATGGAGGAACAGAACGAGCAGGAAGGTTCGGAAGACAACGTTGAAAAAGCCTATACCTTAACCCCTGCCTCCATAGACCTGAAAGCTTTAGTTATTTATGTAAAGGGCAAAAAACACTGGAAATGTCCTCACTGTgaaaaatttttcaatcaatcaGGCAACCTGAAAGCTCATATCAATACTCACACCGGTTACAGGCCTTACACCTGCAATCTCTGCAAGCGTTCGTTCGCCCAAAAAAGCAACCTTAATTACCACATGAAAGCCTCCCATGATCCGCAGCGCCCCTTCAAGTGCAACGCCTGTGACCGTGCATTTGCCTCGATGGATCAAACGGTCACTCATCTGAAGTTCAAGCATACGAATTCGGACGCAAATCTGTCTCGATCATTGTCAGCAAAACGCCATCACTGCCCCTACTGTGGAAAAGGATTCTCCCAGAGTTTCAACCTGAAGTTGCACGTCAATACTCATACCGGCGAGCGGCCTTACAAGTGTGATCTCTGTCCGAAAACATTTACCCAGCGTAGCAATTTAAACGTTCACATTAACAAGTGTCACCGGGCGAAGAACCCTAGTCAGCAACAAGCGGTTCCACAGAAGGTTTAA
- Protein Sequence
- MNYEYLQEHLDLSTCRSICRLCLCTSGKMEDLFFNDDDDQLIEKIAECTAIKMAPANGVISSICHTCKTNLSSFYRFREQCIRSEEIFQSKTDKMEKETIEVVPDIFSLHSEDENETSEINQDNPYGDMNFVEALNSIIKIEQTQMEEQNEQEGSEDNVEKAYTLTPASIDLKALVIYVKGKKHWKCPHCEKFFNQSGNLKAHINTHTGYRPYTCNLCKRSFAQKSNLNYHMKASHDPQRPFKCNACDRAFASMDQTVTHLKFKHTNSDANLSRSLSAKRHHCPYCGKGFSQSFNLKLHVNTHTGERPYKCDLCPKTFTQRSNLNVHINKCHRAKNPSQQQAVPQKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01525352;
- 90% Identity
- iTF_01525352;
- 80% Identity
- iTF_01525352;