Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056644.1:27545470-27560890[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.3 1.4e+04 -2.0 0.0 26 47 150 171 144 178 0.78

2 3 6.5e-06 0.04 15.8 1.4 17 48 197 228 176 231 0.81

3 3 1.3e-05 0.083 14.7 0.1 18 47 327 357 323 360 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.3	1.4e+04	-2.0	0.0	26	47	150	171	144	178	0.78
2	3	6.5e-06	0.04	15.8	1.4	17	48	197	228	176	231	0.81
3	3	1.3e-05	0.083	14.7	0.1	18	47	327	357	323	360	0.85

Sequence Information

Coding Sequence: ATGGAACAATTCACTCCAATAAAGGTAGAAGAGCTTATACTATTCGACACTTTGCCTGTGGAAGAGGAATCTCCATTCGATCGGTGCTCCGGTGAAACGACTGCAACGAATGCCCTGAGGGAAGGCTCAGCAGATGTGATACAAGGACCTGTGAAGAATATCACTGACCAAGTAAAGATCACAGCAGATTGTAAAGAATCTGCAGCTTCTAGCTCCAGCCACTCGAAGTGTTCGAAAATATGCAATACCGTTGTTATTGATCATCCACTGAAAAAGGATGTTTGCGGATTCCGCAACAGGAAATTTAGCAGAAAAGACAACTTGGAGAATCATAGCAGAACTCATACCGAGAAACGTTCCTTTGAATGTGATACCTGTAATAAAACATTCAATAGCCCCAGGGATCTACTGTACCATAAGAATGCCCATACAGGAGAAAGTGAGTTCGTATGTGACATATGCGAACGACGTTTCACCAAAAAGAAAAGATTATTATCCCACATGAATCTACATCGCACAGATTTCCCACATCAGTGTCGGATTTGCAGTAAAAAATTTCCAACTGGATACGAACTCGCAGATCATATGCCCCGGCACAGCGATGAGCGACCTTTCAAATGCCCTATCTGTAGCAAATCAATGAAGAGATCCAAAGCATTACGGATACATGTAAACACAATGCACCAGTTCGATACATTCCCAAGCAACTTGAACAGTTCGAGACCGGGAAATGGCCCCGGGAAGCGACGTTTTGCTTGTGATATCTGCGGCAGAACATGCAACACACCTGAACGTTTGCACCACCATATGAGTGCTCATACAGGAGACCGGAACTTCGAGTGTGACATATGCGGACGACGATTTAGTCATAAAGCCACTTTATCGATTCACATGAATATACACCGTACAGGTTGCCCGCATAAGTGTTTGAAGTGCGATAGAACTTTCAAAACTAACATTCGTCTCGAAGACCATATGCGTAGTCACAGCGAGGAGCGACCCTTCAAATGTAGTGTCTGTGACATATCATACAAGAGGTCGAGAGCTTTAAAGCGTCATATGCTACTGAAGGGCCACGAGGTCGATCGATTGCCAAGGTCGCTTCCGCTTTCTGTAGCTCGCTTGAATGTTCCGCTCTCCGTTCGAGCCAATGCCTGCCGGATCCTTGCATTTCTGGACACGATACGCGTTTTCACCACTCTACGAACTCAACACTTCCGGTTGTCTCCATCTATGACAGACACCAGATCTCCAGCTTACAGCGCGTTCCCACATCACGCTGCCCAACTGCTTCGGACGCTGAAACACGTCCCTAAGCGCCACGGCAGGATGTGGCTGTTAACCTACCGAGCATCTACTGTACTCACGATCAAAGTGATATGGAGTGAGAAGTGA
Protein Sequence: MEQFTPIKVEELILFDTLPVEEESPFDRCSGETTATNALREGSADVIQGPVKNITDQVKITADCKESAASSSSHSKCSKICNTVVIDHPLKKDVCGFRNRKFSRKDNLENHSRTHTEKRSFECDTCNKTFNSPRDLLYHKNAHTGESEFVCDICERRFTKKKRLLSHMNLHRTDFPHQCRICSKKFPTGYELADHMPRHSDERPFKCPICSKSMKRSKALRIHVNTMHQFDTFPSNLNSSRPGNGPGKRRFACDICGRTCNTPERLHHHMSAHTGDRNFECDICGRRFSHKATLSIHMNIHRTGCPHKCLKCDRTFKTNIRLEDHMRSHSEERPFKCSVCDISYKRSRALKRHMLLKGHEVDRLPRSLPLSVARLNVPLSVRANACRILAFLDTIRVFTTLRTQHFRLSPSMTDTRSPAYSAFPHHAAQLLRTLKHVPKRHGRMWLLTYRASTVLTIKVIWSEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01525202;
90% Identity: iTF_01525202;
80% Identity: iTF_01525202;