Wsmi022619.2
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:93657632-93667001[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.005 31 6.5 0.1 22 43 232 253 224 262 0.85 2 6 0.0031 19 7.2 0.1 23 47 261 285 258 291 0.83 3 6 0.0072 44 6.0 0.1 23 48 289 314 287 319 0.84 4 6 0.0025 15 7.5 0.2 23 48 317 342 313 347 0.85 5 6 0.0049 30 6.6 0.0 23 52 345 374 343 376 0.87 6 6 1.2 7.6e+03 -1.1 0.0 23 45 373 395 369 398 0.83
Sequence Information
- Coding Sequence
- ATGTTTTATCCTTTGCATTCAACCTTCGAAGATGGACAGATTGAGGTTGGTCGCTCGGAGACGCTAGGCCAAGAATCGCCGGTTGACAACAGGCATTCACTTGCCGTGTCATTTTCGCTAGGAAACACACTTATCAATCTCAACAAGATCAAACACCCAAGTGCCCAATTTCAACATGATCAAATGTATTCGATGAGACCCGAATTGGCTATGAAGAAAAATGTCGAATTCACTTACTCACCAAGTTCAACGCCTCAACCAACATTCGAAGATGGTGAAATTGAACTTGCCCGTCCGGAAATGCTGAGCCAAGAGCAGCAGCTCGTGGACAATAAGCATTCACTCGCTGTATCACTCTCGCTAGGAAATACGCTAATAAATCTCAATAAGATCAAGTACACAACCGCCCAATCTCAGCATGATCAAATGTCATCGATGCGTCCTGAAATGCTAACGCAGTATCCGCTAGCCGATAATAAACATTCGCTCGCCGTGTCGCTTTCACTGGGAAACACATTAATCAATCTCAACAAGATCAAGTGTCCACAGTGTCGGAAGCGATTCGATACGATGGAGGAAATGCAACAGCATCGCACTAAGCATTTGACTGAGAATAAGTTCAAGTGCGAAATATGCAGCAAAGAATTCCCTAGTCACAGCTCTATGTGGAAGCACACCAAAGCTCACACCGGAGATCGTCCATTTGTTTGTCAAATTTGCAACAAAGGGTTTACACAGCTAGCTAACTTACAGCGCCATGATCTTGTTCATAACGGACTGAAGCCTTTCAAATGTCCAATCTGCGAAAAGTGCTTTACACAGCAGGCAAATATGTTGAAACATCAACTTCTCCATACCGGGCTTAAACCATATAAGTGTCCAGTGTGCCAGAAAGCATTTTCTCAACATGCAAATATGATAAAACATCAGATGCTTCATACAGGTTTGAAGCCTTATAAATGTCCCGTGTGCCATAAGGCTTTCACTCAACACGCCAACATGGTTAAACATCAGATGCTTCATACCGGTTTAAAACCGTACAAGTGTCCTGTTTGTGATAAAGCGTTTACTCAGCAAGCCAACATGGTTAAGCATCAGATGCTTCATACCGGAGTAAAACCTTACAAGTGTTCTACGTGTGGCAAGGCTTTTGCACAACAGGCAAACATGGTCAAGCATCAGATGCTTCATACCGATAAGACGAAATTCAATACCGTTTAG
- Protein Sequence
- MFYPLHSTFEDGQIEVGRSETLGQESPVDNRHSLAVSFSLGNTLINLNKIKHPSAQFQHDQMYSMRPELAMKKNVEFTYSPSSTPQPTFEDGEIELARPEMLSQEQQLVDNKHSLAVSLSLGNTLINLNKIKYTTAQSQHDQMSSMRPEMLTQYPLADNKHSLAVSLSLGNTLINLNKIKCPQCRKRFDTMEEMQQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGDRPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCQKAFSQHANMIKHQMLHTGLKPYKCPVCHKAFTQHANMVKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGVKPYKCSTCGKAFAQQANMVKHQMLHTDKTKFNTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01525145;
- 90% Identity
- iTF_01525145;
- 80% Identity
- iTF_01525145;