Wsmi019388.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:41073698-41075365[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.7 1e+04 -1.6 0.0 26 45 153 172 150 175 0.82 2 10 2.2 1.3e+04 -1.9 0.1 22 43 211 232 208 241 0.71 3 10 0.001 6.2 8.7 0.0 22 52 239 269 232 270 0.82 4 10 0.0016 10 8.1 0.0 22 44 267 289 264 294 0.89 5 10 0.0063 39 6.2 0.3 21 45 294 318 289 323 0.89 6 10 0.18 1.1e+03 1.6 0.1 21 52 347 378 337 380 0.87 7 10 0.0001 0.64 11.9 0.1 22 52 376 406 364 408 0.85 8 10 0.00084 5.1 9.0 0.1 21 45 431 455 421 462 0.86 9 10 0.0043 26 6.7 0.1 21 52 459 490 455 491 0.87 10 10 0.0035 22 7.0 0.4 20 46 486 512 483 518 0.86
Sequence Information
- Coding Sequence
- ATGTTGGGAAAATACGACGAGCCACCGGAGAACATCCGTAATCGCAGTAACGCGGTTCCAATGTCGATACCTATGATAGCTCTACCGACGTATCAATTAACAACTTCCACTGCGTCTACTCTTACACGCAGACCGAACGAAAATGCATCAATTATTAATACTTCTATTGGACCATCTTCCACCGCGGTTACCAACAGTAGCAGTTCGGAATCGAGCGTTAAACAGCTGTCCCCTCAGTATCAATGTCTGCAATGTCTCAAATATTTCAATAACACTTCCGCTCTTTCATTGCACATGGACTGGCATGAAAACGAGCAACGGGCAGCCAGCAGTAGCTCCGGCTATAACGGACAGATGGTTTCTGTGAATGATATCAAAAGAGAACCCCAACCGTTTCAAATTGTCACACAGACGATCTACCCGGGTACGTTTCAAGTGGTCACAAGTATCGGTCAGTCTTGTGATATTTGTCAGAAAGTGTTCAATACTGCCGAACAGTTTCACGCTCATATGAAGATCCACGAAGGTGAATATCGCAATCGAGCGCTCTACCAATCGAATAACACTAACGTTGAACAACTGGCGGCTGGTCAGCTACCAATTAAAGAGCAGGAACCAGAAGAATGCAATGAGAAGCCACTTGATTGTATTGTGTGCCATCAGAAATTTCAAACAGCGCCGCTTCTAGCTCTCCATTTAAGAGAGCACAGCACTCAGAAGCCGTACGCTTGCAATATTTGTGGAAAAGGTTTCATTCAGTCGAACAACCTTTCCACCCACATGAAGGTGCATTCGGGACAAAAACCATTCAAGTGTGACATTTGTAATAAAAACTTTAGTCAATCGAACAATTTAAAGACACACGTTAGAACTCACACAAATGAGCGGCCATATGCATGTACAATCTGCGAAAAACGGTTCAATCAGAAAAACAACCTTACGACTCACATGCGAACGCACTCGCTTGTTTGCAGAATCTGCCGAACACGGTTCCAGAACACAACGGAGCTTACCGATCACATTCGTGTTTGCTATGCGGATCAGAAACCGAACATTTGCACTACGTGCAACAAGGTTTTCATCGGTGAAGAGGAACTAGCAGAACACATGAAACAGCATAATCAAGCTAAGCCACATAAATGCCAGATATGTCTGAAGTCTTTCACCCAATCTAATAATTTGAAAACGCACATGAAAACCCATATCTTCCACGATCCATTCAAATGTCCCTTCTGCTCGCGCTCGTTCCCAAATCAGGAGGAATTCGAACGCCACTCGTTAGTGCACTCTTCACCTAAACCATTCAGCTGTCCTTACTGTGGCAAACAGTTCATTCAGTCGAACAACTTGAAGACTCACGTACGCACCCATACCGGGGAGAAACCCTACAAGTGTTACGTCTGCGATAGACTATTCAATCAGAAGAACAATCTAAATACCCATATGCGAATCCATCAGGGTCTTAAACCCTACCAGTGCACGGTTTGCGAGAAGCGCTTCAATCAGAGCAACAATTTGAATAAACACATTTACAAGGTGCACTGCCACGAGAAGGCGCTGGCTGCGGTCGCTGTTCCCCTCGGAACCGGTACCGAAACGGGGGGTGCAATCGTGACGACCACCGGTAGCGTCgttgcgacgcttgacggtgtCGGTACACCGAGCTGA
- Protein Sequence
- MLGKYDEPPENIRNRSNAVPMSIPMIALPTYQLTTSTASTLTRRPNENASIINTSIGPSSTAVTNSSSSESSVKQLSPQYQCLQCLKYFNNTSALSLHMDWHENEQRAASSSSGYNGQMVSVNDIKREPQPFQIVTQTIYPGTFQVVTSIGQSCDICQKVFNTAEQFHAHMKIHEGEYRNRALYQSNNTNVEQLAAGQLPIKEQEPEECNEKPLDCIVCHQKFQTAPLLALHLREHSTQKPYACNICGKGFIQSNNLSTHMKVHSGQKPFKCDICNKNFSQSNNLKTHVRTHTNERPYACTICEKRFNQKNNLTTHMRTHSLVCRICRTRFQNTTELTDHIRVCYADQKPNICTTCNKVFIGEEELAEHMKQHNQAKPHKCQICLKSFTQSNNLKTHMKTHIFHDPFKCPFCSRSFPNQEEFERHSLVHSSPKPFSCPYCGKQFIQSNNLKTHVRTHTGEKPYKCYVCDRLFNQKNNLNTHMRIHQGLKPYQCTVCEKRFNQSNNLNKHIYKVHCHEKALAAVAVPLGTGTETGGAIVTTTGSVVATLDGVGTPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01525077;
- 90% Identity
- iTF_01525077;
- 80% Identity
- iTF_01525077;