Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.043 45 5.9 6.5 13 29 29 45 21 83 0.82

2 10 0.0021 2.2 10.1 2.9 11 38 84 107 71 109 0.83

3 10 1.2 1.2e+03 1.3 0.4 6 38 110 141 108 143 0.74

4 10 0.051 53 5.7 1.4 6 38 137 165 134 169 0.75

5 10 0.64 6.7e+02 2.1 2.9 15 41 175 198 167 200 0.83

6 10 0.00079 0.82 11.4 2.4 4 40 193 225 190 231 0.87

7 10 0.19 2e+02 3.8 0.1 14 29 232 247 225 251 0.79

8 10 0.00037 0.38 12.5 0.2 2 28 249 274 248 282 0.88

9 10 0.8 8.3e+02 1.8 0.8 5 27 283 303 279 314 0.78

10 10 0.0052 5.4 8.8 0.6 13 30 317 334 308 337 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.043	45	5.9	6.5	13	29	29	45	21	83	0.82
2	10	0.0021	2.2	10.1	2.9	11	38	84	107	71	109	0.83
3	10	1.2	1.2e+03	1.3	0.4	6	38	110	141	108	143	0.74
4	10	0.051	53	5.7	1.4	6	38	137	165	134	169	0.75
5	10	0.64	6.7e+02	2.1	2.9	15	41	175	198	167	200	0.83
6	10	0.00079	0.82	11.4	2.4	4	40	193	225	190	231	0.87
7	10	0.19	2e+02	3.8	0.1	14	29	232	247	225	251	0.79
8	10	0.00037	0.38	12.5	0.2	2	28	249	274	248	282	0.88
9	10	0.8	8.3e+02	1.8	0.8	5	27	283	303	279	314	0.78
10	10	0.0052	5.4	8.8	0.6	13	30	317	334	308	337	0.79

Coding Sequence: ATGAGAAAGAACTGCACAGATGCGATTTTTGTGGAAGAAGCTTTGTTCATCGCTACAAACTCGCACAACATTTGGACACACAGTGATGAACGACGGTACCAGTGCAACATCTGCGGTAAACAGTACAAGACAAGAGGAGTTCTTTACAATCAAAGAAGAGTACATAACGGCGAACAATCGTCCAAGTTCGACGAATCCGGCGGAACGATCAGTAAGCTTAGGAATCACTCAAATCATATGTCCACTCACAGTGACGTGGAAAGGTACAGATGTGACATCTGCGGCAAGGATTACAAATCAACAACAAATCTTAATCAGCACAAGAAGTATCACACATCTCATGAGGATGAACTGCTCAAATGCCCCGACTGCGGGAAAGGTTTCGTATATCGCTACGCACTTGTAAAACATATGACCACTCACAGTAACGAGCGAGAGTTCGAGTGCGACATTTGTGGCAAATCGTATAAAACGGCAACTAATCTCTATGATCATAGGAAGTATCACATATCCGGTGAGAACAAACTGCACAGATGCGACAATTGTGGAAAAGGTTTCGTTTATCACCATTTACTCTTAAGACATATGCGTACTCACAGTGATGAGAGACGGTACAGGTGCGACATATGCAGTAAagatttcaaatcggcaagtAATCTTAGTGAGCACATGAAATATCACACAACCCGTGAGGATGAACTGCACAGATGCGACTTTTGTGCGAAAACTTTCGTTTATCGCTCGGTCCTCTTAAATTATATGCACGCTCACAGTGACGAGCGAAGCCGTAGATGCGACATCTGCGGCAAGGAATACAAATCACCAGCAGGTCTGAATCAACACAAGAAATATCACACATCCCATGAGAATGAACTACACAAATGCCCAATTTGCGGAAAAGGTTTCGTGCATCGCCGCATACTCGTAGAACATATAAACACTCACAGTGACAAGCGTCGGTATGAGTGCGATATCTGCGGCAAGCAGTACAAGGCAAGAGGAGGACTTTACGTGCACAAGAAAATGCATAACGGTGAACAATCGTGA
Protein Sequence: MRKNCTDAIFVEEALFIATNSHNIWTHSDERRYQCNICGKQYKTRGVLYNQRRVHNGEQSSKFDESGGTISKLRNHSNHMSTHSDVERYRCDICGKDYKSTTNLNQHKKYHTSHEDELLKCPDCGKGFVYRYALVKHMTTHSNEREFECDICGKSYKTATNLYDHRKYHISGENKLHRCDNCGKGFVYHHLLLRHMRTHSDERRYRCDICSKDFKSASNLSEHMKYHTTREDELHRCDFCAKTFVYRSVLLNYMHAHSDERSRRCDICGKEYKSPAGLNQHKKYHTSHENELHKCPICGKGFVHRRILVEHINTHSDKRRYECDICGKQYKARGGLYVHKKMHNGEQS

Sequence clustering based on sequence similarity using MMseqs2